miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 5' -55.5 NC_001798.1 + 28953 0.68 0.838038
Target:  5'- -cGAGggCcCGGCGccGCCCCGCCgcucCGCc -3'
miRNA:   3'- caCUCa-GuGCCGU--UGGGGUGGaa--GCG- -5'
5510 5' -55.5 NC_001798.1 + 29605 0.66 0.926279
Target:  5'- -cGGGUauaaGGCAGCCCCgugugacggucggGCCgcaUUCGCa -3'
miRNA:   3'- caCUCAgug-CCGUUGGGG-------------UGG---AAGCG- -5'
5510 5' -55.5 NC_001798.1 + 30452 0.68 0.846156
Target:  5'- -cGAGcgcCAgGGCAGCCCCACgccCGCc -3'
miRNA:   3'- caCUCa--GUgCCGUUGGGGUGgaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 30557 0.66 0.915674
Target:  5'- cGUGuG-CACGGaCGagaucGCCCCGCCccugCGCu -3'
miRNA:   3'- -CACuCaGUGCC-GU-----UGGGGUGGaa--GCG- -5'
5510 5' -55.5 NC_001798.1 + 30814 0.66 0.926814
Target:  5'- -cGGGcaaccCGCGGaCGGCCCCGCgCUcccugUCGCu -3'
miRNA:   3'- caCUCa----GUGCC-GUUGGGGUG-GA-----AGCG- -5'
5510 5' -55.5 NC_001798.1 + 31273 0.78 0.347975
Target:  5'- cUGGGUCugGggGCGGCCCUGCCgUCGCg -3'
miRNA:   3'- cACUCAGugC--CGUUGGGGUGGaAGCG- -5'
5510 5' -55.5 NC_001798.1 + 35180 0.69 0.785666
Target:  5'- -gGAGUCccucucgaucgGCGGCgGGCCCCugCgUUCGUu -3'
miRNA:   3'- caCUCAG-----------UGCCG-UUGGGGugG-AAGCG- -5'
5510 5' -55.5 NC_001798.1 + 36443 0.67 0.906076
Target:  5'- -gGGGUCGCGGCGgggaaggaaggaaagACCCCGgaagCGCc -3'
miRNA:   3'- caCUCAGUGCCGU---------------UGGGGUggaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 36934 0.66 0.915674
Target:  5'- uUGGGggCugGGCAugCCCACgcaUGCa -3'
miRNA:   3'- cACUCa-GugCCGUugGGGUGgaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 39684 0.67 0.897183
Target:  5'- ------gGCGGCGACCUCGCCgccCGCc -3'
miRNA:   3'- cacucagUGCCGUUGGGGUGGaa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 39814 0.67 0.901686
Target:  5'- gGUG-GUCGCGGguGgcggaucgucggcuCCCCGCCg-CGCu -3'
miRNA:   3'- -CACuCAGUGCCguU--------------GGGGUGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 40016 0.7 0.76701
Target:  5'- ---cGUCGCGGCGGCCCU-CCU-CGUc -3'
miRNA:   3'- cacuCAGUGCCGUUGGGGuGGAaGCG- -5'
5510 5' -55.5 NC_001798.1 + 40410 0.66 0.909746
Target:  5'- --aGGUCugGGU----CCGCCUUCGCg -3'
miRNA:   3'- cacUCAGugCCGuuggGGUGGAAGCG- -5'
5510 5' -55.5 NC_001798.1 + 41673 0.66 0.915674
Target:  5'- -cGAG-CAUGGCGugCCCGCa-UCGa -3'
miRNA:   3'- caCUCaGUGCCGUugGGGUGgaAGCg -5'
5510 5' -55.5 NC_001798.1 + 43333 0.67 0.897183
Target:  5'- cUGGGggGCGGCAgugccGCCCC-CCgcgUCGUc -3'
miRNA:   3'- cACUCagUGCCGU-----UGGGGuGGa--AGCG- -5'
5510 5' -55.5 NC_001798.1 + 43453 0.67 0.869314
Target:  5'- -cGAGUCu--GCGACCCCGCaguaCGCg -3'
miRNA:   3'- caCUCAGugcCGUUGGGGUGgaa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 44441 0.66 0.915674
Target:  5'- -gGAG-CACGGCGACgUCGuCCgcUCGCu -3'
miRNA:   3'- caCUCaGUGCCGUUGgGGU-GGa-AGCG- -5'
5510 5' -55.5 NC_001798.1 + 47232 0.76 0.422774
Target:  5'- gGUGGGcgugucgUugGGCGGCCCCcgGCCUUUGCu -3'
miRNA:   3'- -CACUCa------GugCCGUUGGGG--UGGAAGCG- -5'
5510 5' -55.5 NC_001798.1 + 47819 0.68 0.838038
Target:  5'- -cGGGcucUCACGGCcccGGCCCCGCg--CGCg -3'
miRNA:   3'- caCUC---AGUGCCG---UUGGGGUGgaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 48779 0.76 0.421892
Target:  5'- -cGGGgacgCACGGCAcCCCCGgcgauucCCUUCGCg -3'
miRNA:   3'- caCUCa---GUGCCGUuGGGGU-------GGAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.