miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 5' -55.5 NC_001798.1 + 51908 0.66 0.923572
Target:  5'- -cGAGccUCACGGCGuugcggcccguggggGCCgCCGCCgugcCGCu -3'
miRNA:   3'- caCUC--AGUGCCGU---------------UGG-GGUGGaa--GCG- -5'
5510 5' -55.5 NC_001798.1 + 52248 0.66 0.925204
Target:  5'- cGUGGGggCGCGccuGCAcccgcacuccgcccACCCCGCgUUUGCg -3'
miRNA:   3'- -CACUCa-GUGC---CGU--------------UGGGGUGgAAGCG- -5'
5510 5' -55.5 NC_001798.1 + 52362 0.66 0.932024
Target:  5'- -cGAGgcgCugGGCGacaccgcggcGCgCCGCCUgcUCGCc -3'
miRNA:   3'- caCUCa--GugCCGU----------UGgGGUGGA--AGCG- -5'
5510 5' -55.5 NC_001798.1 + 52794 0.77 0.388342
Target:  5'- cGUGAGcgggACGGCAGaCCCCGCCUUCcuGCu -3'
miRNA:   3'- -CACUCag--UGCCGUU-GGGGUGGAAG--CG- -5'
5510 5' -55.5 NC_001798.1 + 53831 0.72 0.637308
Target:  5'- cGUGuGUCGCcGCcugGGCCCCGCCgaUCGCc -3'
miRNA:   3'- -CACuCAGUGcCG---UUGGGGUGGa-AGCG- -5'
5510 5' -55.5 NC_001798.1 + 55522 0.66 0.921363
Target:  5'- ----cUCACGGCAACCCCaggGCgUUaCGUa -3'
miRNA:   3'- cacucAGUGCCGUUGGGG---UGgAA-GCG- -5'
5510 5' -55.5 NC_001798.1 + 58103 0.7 0.757497
Target:  5'- -aGGGUCGCGGCcGCCCaggGCCcggCGUc -3'
miRNA:   3'- caCUCAGUGCCGuUGGGg--UGGaa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 58177 0.66 0.921363
Target:  5'- -cGAGauccaCACGGCGccCCCCAgCaUCGCg -3'
miRNA:   3'- caCUCa----GUGCCGUu-GGGGUgGaAGCG- -5'
5510 5' -55.5 NC_001798.1 + 58930 0.66 0.926814
Target:  5'- -aGGGcCACGGCcgcucCCCCGCCgaccaGCc -3'
miRNA:   3'- caCUCaGUGCCGuu---GGGGUGGaag--CG- -5'
5510 5' -55.5 NC_001798.1 + 60319 0.67 0.889877
Target:  5'- gGUGGGUUugGCGGUcucguCCCCgacggcguucaccACCUUCGUg -3'
miRNA:   3'- -CACUCAG--UGCCGuu---GGGG-------------UGGAAGCG- -5'
5510 5' -55.5 NC_001798.1 + 64259 0.68 0.829733
Target:  5'- uUGucGUCGcCGGCGaacACCCCGCUguuggUCGCc -3'
miRNA:   3'- cACu-CAGU-GCCGU---UGGGGUGGa----AGCG- -5'
5510 5' -55.5 NC_001798.1 + 66636 0.66 0.912146
Target:  5'- --cGGUCgACGGCGucccccagaaaccgcGCCaCCGCCUcCGCg -3'
miRNA:   3'- cacUCAG-UGCCGU---------------UGG-GGUGGAaGCG- -5'
5510 5' -55.5 NC_001798.1 + 68215 0.66 0.909746
Target:  5'- -cGA-UCACGcGCAggcccgccACCCCGCCgcgCGCc -3'
miRNA:   3'- caCUcAGUGC-CGU--------UGGGGUGGaa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 70574 0.67 0.876614
Target:  5'- -----cCACGGCGGCCCUgggGCCggugCGCg -3'
miRNA:   3'- cacucaGUGCCGUUGGGG---UGGaa--GCG- -5'
5510 5' -55.5 NC_001798.1 + 70941 0.73 0.596374
Target:  5'- -cGGGgCGCGGUggUCCCGCCgcCGCu -3'
miRNA:   3'- caCUCaGUGCCGuuGGGGUGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 74787 0.67 0.869314
Target:  5'- -cGGGUcCACcGCAcgccGCCCCGCCccCGCa -3'
miRNA:   3'- caCUCA-GUGcCGU----UGGGGUGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 77267 0.69 0.802877
Target:  5'- cUGGG-CGCGGCcgcccgcGACCCgGCCU-CGCc -3'
miRNA:   3'- cACUCaGUGCCG-------UUGGGgUGGAaGCG- -5'
5510 5' -55.5 NC_001798.1 + 77874 0.66 0.90914
Target:  5'- -cGAG--GCGGUcACCCUcgcccuggauacgGCCUUCGCg -3'
miRNA:   3'- caCUCagUGCCGuUGGGG-------------UGGAAGCG- -5'
5510 5' -55.5 NC_001798.1 + 78547 0.69 0.82039
Target:  5'- -cGGGUCAUGGCGGgCCUgcgggaggcgcugGCCgcgCGCg -3'
miRNA:   3'- caCUCAGUGCCGUUgGGG-------------UGGaa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 81094 0.67 0.903582
Target:  5'- -gGGGacguucUCGCGGCGAgCgCCGCCgaCGCg -3'
miRNA:   3'- caCUC------AGUGCCGUUgG-GGUGGaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.