miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 5' -55.5 NC_001798.1 + 100495 0.66 0.926814
Target:  5'- cUGAGUCGCGcCGACgucaCCACCgUCaGCa -3'
miRNA:   3'- cACUCAGUGCcGUUGg---GGUGGaAG-CG- -5'
5510 5' -55.5 NC_001798.1 + 150858 0.66 0.926814
Target:  5'- -cGGGUCGCGGCGGgcugggaggUUCCGCgggUCGCc -3'
miRNA:   3'- caCUCAGUGCCGUU---------GGGGUGga-AGCG- -5'
5510 5' -55.5 NC_001798.1 + 27938 0.66 0.932024
Target:  5'- -gGGGUCcCGGCGccgGCCgCGCCccggCGCu -3'
miRNA:   3'- caCUCAGuGCCGU---UGGgGUGGaa--GCG- -5'
5510 5' -55.5 NC_001798.1 + 120836 0.66 0.932024
Target:  5'- uUGAGcagcUCGuCGGCGGCCCCGCggaggUUGUa -3'
miRNA:   3'- cACUC----AGU-GCCGUUGGGGUGga---AGCG- -5'
5510 5' -55.5 NC_001798.1 + 149456 0.66 0.932024
Target:  5'- -aGGGU-GCGGCGGCUCCACgCgggggcCGCg -3'
miRNA:   3'- caCUCAgUGCCGUUGGGGUG-Gaa----GCG- -5'
5510 5' -55.5 NC_001798.1 + 58177 0.66 0.921363
Target:  5'- -cGAGauccaCACGGCGccCCCCAgCaUCGCg -3'
miRNA:   3'- caCUCa----GUGCCGUu-GGGGUgGaAGCG- -5'
5510 5' -55.5 NC_001798.1 + 55522 0.66 0.921363
Target:  5'- ----cUCACGGCAACCCCaggGCgUUaCGUa -3'
miRNA:   3'- cacucAGUGCCGUUGGGG---UGgAA-GCG- -5'
5510 5' -55.5 NC_001798.1 + 40410 0.66 0.909746
Target:  5'- --aGGUCugGGU----CCGCCUUCGCg -3'
miRNA:   3'- cacUCAGugCCGuuggGGUGGAAGCG- -5'
5510 5' -55.5 NC_001798.1 + 68215 0.66 0.909746
Target:  5'- -cGA-UCACGcGCAggcccgccACCCCGCCgcgCGCc -3'
miRNA:   3'- caCUcAGUGC-CGU--------UGGGGUGGaa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 90727 0.66 0.909746
Target:  5'- -cGGGgCACGGCAcugcagguGCCgauCCACCUcCGCc -3'
miRNA:   3'- caCUCaGUGCCGU--------UGG---GGUGGAaGCG- -5'
5510 5' -55.5 NC_001798.1 + 66636 0.66 0.912146
Target:  5'- --cGGUCgACGGCGucccccagaaaccgcGCCaCCGCCUcCGCg -3'
miRNA:   3'- cacUCAG-UGCCGU---------------UGG-GGUGGAaGCG- -5'
5510 5' -55.5 NC_001798.1 + 36934 0.66 0.915674
Target:  5'- uUGGGggCugGGCAugCCCACgcaUGCa -3'
miRNA:   3'- cACUCa-GugCCGUugGGGUGgaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 8745 0.66 0.915674
Target:  5'- --aAGUCguuGGCGGCCUCGUCUUCGCu -3'
miRNA:   3'- cacUCAGug-CCGUUGGGGUGGAAGCG- -5'
5510 5' -55.5 NC_001798.1 + 44441 0.66 0.915674
Target:  5'- -gGAG-CACGGCGACgUCGuCCgcUCGCu -3'
miRNA:   3'- caCUCaGUGCCGUUGgGGU-GGa-AGCG- -5'
5510 5' -55.5 NC_001798.1 + 93025 0.66 0.915674
Target:  5'- -cGAGggCGCGGCccuCCCCGCCgacauuaCGUu -3'
miRNA:   3'- caCUCa-GUGCCGuu-GGGGUGGaa-----GCG- -5'
5510 5' -55.5 NC_001798.1 + 121537 0.66 0.915674
Target:  5'- --cGGUCGCGGC-GCUgCGCCUggCGUg -3'
miRNA:   3'- cacUCAGUGCCGuUGGgGUGGAa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 30557 0.66 0.915674
Target:  5'- cGUGuG-CACGGaCGagaucGCCCCGCCccugCGCu -3'
miRNA:   3'- -CACuCaGUGCC-GU-----UGGGGUGGaa--GCG- -5'
5510 5' -55.5 NC_001798.1 + 41673 0.66 0.915674
Target:  5'- -cGAG-CAUGGCGugCCCGCa-UCGa -3'
miRNA:   3'- caCUCaGUGCCGUugGGGUGgaAGCg -5'
5510 5' -55.5 NC_001798.1 + 98644 0.66 0.920805
Target:  5'- -cGAccGUCGCGGCGAacgggggUCCCGCCUcccggcCGCc -3'
miRNA:   3'- caCU--CAGUGCCGUU-------GGGGUGGAa-----GCG- -5'
5510 5' -55.5 NC_001798.1 + 138699 0.66 0.920805
Target:  5'- -gGAGUCgaacgcgACGGCcagaucagaAGCCCCggGCCggCGCg -3'
miRNA:   3'- caCUCAG-------UGCCG---------UUGGGG--UGGaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.