Results 41 - 60 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5510 | 5' | -55.5 | NC_001798.1 | + | 123427 | 0.69 | 0.821248 |
Target: 5'- -cGGGUCACcggGGCGcCCCCcCCgaCGCg -3' miRNA: 3'- caCUCAGUG---CCGUuGGGGuGGaaGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 28274 | 0.68 | 0.829733 |
Target: 5'- -cGGGcCGCaGCGcccccuuccGCCCCACCUggCGCu -3' miRNA: 3'- caCUCaGUGcCGU---------UGGGGUGGAa-GCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 64259 | 0.68 | 0.829733 |
Target: 5'- uUGucGUCGcCGGCGaacACCCCGCUguuggUCGCc -3' miRNA: 3'- cACu-CAGU-GCCGU---UGGGGUGGa----AGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 97758 | 0.68 | 0.836392 |
Target: 5'- -cGGGUCagcguccACGGCGaggugcuGCCCgCgACCUUCGCc -3' miRNA: 3'- caCUCAG-------UGCCGU-------UGGG-G-UGGAAGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 47819 | 0.68 | 0.838038 |
Target: 5'- -cGGGcucUCACGGCcccGGCCCCGCg--CGCg -3' miRNA: 3'- caCUC---AGUGCCG---UUGGGGUGgaaGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 134680 | 0.68 | 0.838038 |
Target: 5'- -cGGGUCACGGCGcggguGCUgCugCcgCGCg -3' miRNA: 3'- caCUCAGUGCCGU-----UGGgGugGaaGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 121698 | 0.68 | 0.838038 |
Target: 5'- -gGGGcCGCGGC--UCCCGCCgcCGCg -3' miRNA: 3'- caCUCaGUGCCGuuGGGGUGGaaGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 28953 | 0.68 | 0.838038 |
Target: 5'- -cGAGggCcCGGCGccGCCCCGCCgcucCGCc -3' miRNA: 3'- caCUCa-GuGCCGU--UGGGGUGGaa--GCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 15298 | 0.68 | 0.838038 |
Target: 5'- gGUG-GUCGCGGCGACCgaaACgUUgGCg -3' miRNA: 3'- -CACuCAGUGCCGUUGGgg-UGgAAgCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 30452 | 0.68 | 0.846156 |
Target: 5'- -cGAGcgcCAgGGCAGCCCCACgccCGCc -3' miRNA: 3'- caCUCa--GUgCCGUUGGGGUGgaaGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 153399 | 0.68 | 0.846156 |
Target: 5'- --cGGUCGCGGUcGgCCCGCUcgCGCg -3' miRNA: 3'- cacUCAGUGCCGuUgGGGUGGaaGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 146595 | 0.68 | 0.846156 |
Target: 5'- -cGGGcCGCGGCGccagcgGCCCaCGCCUccCGCc -3' miRNA: 3'- caCUCaGUGCCGU------UGGG-GUGGAa-GCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 115786 | 0.68 | 0.846156 |
Target: 5'- cGUG-GUCAaCGGCAACCugCC-CCUggCGCu -3' miRNA: 3'- -CACuCAGU-GCCGUUGG--GGuGGAa-GCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 20260 | 0.68 | 0.854079 |
Target: 5'- -cGAGaUCugcagcaGGCGGCCCCACgUgCGCg -3' miRNA: 3'- caCUC-AGug-----CCGUUGGGGUGgAaGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 105207 | 0.68 | 0.8618 |
Target: 5'- gGUGGGcgACGGCGcuGCCCCGuCCgcagCGCc -3' miRNA: 3'- -CACUCagUGCCGU--UGGGGU-GGaa--GCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 151692 | 0.67 | 0.867082 |
Target: 5'- gGUGGGUCGCGGUgaaggucgucgucaGAgauUCCCACC-UCGg -3' miRNA: 3'- -CACUCAGUGCCG--------------UU---GGGGUGGaAGCg -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 74787 | 0.67 | 0.869314 |
Target: 5'- -cGGGUcCACcGCAcgccGCCCCGCCccCGCa -3' miRNA: 3'- caCUCA-GUGcCGU----UGGGGUGGaaGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 103030 | 0.67 | 0.869314 |
Target: 5'- -cGAGcUCGgccuCGGCGGCCUCGCg-UCGCa -3' miRNA: 3'- caCUC-AGU----GCCGUUGGGGUGgaAGCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 43453 | 0.67 | 0.869314 |
Target: 5'- -cGAGUCu--GCGACCCCGCaguaCGCg -3' miRNA: 3'- caCUCAGugcCGUUGGGGUGgaa-GCG- -5' |
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5510 | 5' | -55.5 | NC_001798.1 | + | 84597 | 0.67 | 0.876614 |
Target: 5'- aGUcGGUCcCGGUGccgguGCCCCGCCgaagCGCg -3' miRNA: 3'- -CAcUCAGuGCCGU-----UGGGGUGGaa--GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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