miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 5' -55.5 NC_001798.1 + 543 0.7 0.738148
Target:  5'- -cGAGcUCGCaGCAGCCCCucCCUccCGCg -3'
miRNA:   3'- caCUC-AGUGcCGUUGGGGu-GGAa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 58103 0.7 0.757497
Target:  5'- -aGGGUCGCGGCcGCCCaggGCCcggCGUc -3'
miRNA:   3'- caCUCAGUGCCGuUGGGg--UGGaa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 129162 0.7 0.757497
Target:  5'- cUGGuUCGCcGCGAgCCCAUCUUCGCc -3'
miRNA:   3'- cACUcAGUGcCGUUgGGGUGGAAGCG- -5'
5510 5' -55.5 NC_001798.1 + 2857 0.7 0.76701
Target:  5'- --cGGcCACGGCGGCCUCGCUgcCGCc -3'
miRNA:   3'- cacUCaGUGCCGUUGGGGUGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 40016 0.7 0.76701
Target:  5'- ---cGUCGCGGCGGCCCU-CCU-CGUc -3'
miRNA:   3'- cacuCAGUGCCGUUGGGGuGGAaGCG- -5'
5510 5' -55.5 NC_001798.1 + 149668 0.7 0.76701
Target:  5'- -cGGGUCGCGG--GCCCCgggcucggggccGCCcUCGCg -3'
miRNA:   3'- caCUCAGUGCCguUGGGG------------UGGaAGCG- -5'
5510 5' -55.5 NC_001798.1 + 81800 0.7 0.76701
Target:  5'- gGUGGcGUCcgcCGGCAcuCCCCGCCccggUCGCc -3'
miRNA:   3'- -CACU-CAGu--GCCGUu-GGGGUGGa---AGCG- -5'
5510 5' -55.5 NC_001798.1 + 35180 0.69 0.785666
Target:  5'- -gGAGUCccucucgaucgGCGGCgGGCCCCugCgUUCGUu -3'
miRNA:   3'- caCUCAG-----------UGCCG-UUGGGGugG-AAGCG- -5'
5510 5' -55.5 NC_001798.1 + 107432 0.69 0.785666
Target:  5'- -gGGGUCgccGCGGCGACCCCGCgCccCGa -3'
miRNA:   3'- caCUCAG---UGCCGUUGGGGUG-GaaGCg -5'
5510 5' -55.5 NC_001798.1 + 139703 0.69 0.785666
Target:  5'- cGUG-GUCACGG--GCgCCACCgaaUCGCg -3'
miRNA:   3'- -CACuCAGUGCCguUGgGGUGGa--AGCG- -5'
5510 5' -55.5 NC_001798.1 + 143110 0.69 0.785666
Target:  5'- uGUGcGUUGCGGCGguGCUCCGCgCUUgCGCu -3'
miRNA:   3'- -CACuCAGUGCCGU--UGGGGUG-GAA-GCG- -5'
5510 5' -55.5 NC_001798.1 + 88 0.69 0.794791
Target:  5'- -cGGGcggCAgGGCAGCCCCGCg--CGCc -3'
miRNA:   3'- caCUCa--GUgCCGUUGGGGUGgaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 154426 0.69 0.794791
Target:  5'- -cGGGcggCAgGGCAGCCCCGCg--CGCc -3'
miRNA:   3'- caCUCa--GUgCCGUUGGGGUGgaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 83873 0.69 0.794791
Target:  5'- -cGAG--GCGGCGACCCCcgGCCcgggCGCu -3'
miRNA:   3'- caCUCagUGCCGUUGGGG--UGGaa--GCG- -5'
5510 5' -55.5 NC_001798.1 + 77267 0.69 0.802877
Target:  5'- cUGGG-CGCGGCcgcccgcGACCCgGCCU-CGCc -3'
miRNA:   3'- cACUCaGUGCCG-------UUGGGgUGGAaGCG- -5'
5510 5' -55.5 NC_001798.1 + 4147 0.69 0.803768
Target:  5'- -gGGGcccUCGCgGGCAcCCCCGCCUccUCGUc -3'
miRNA:   3'- caCUC---AGUG-CCGUuGGGGUGGA--AGCG- -5'
5510 5' -55.5 NC_001798.1 + 100882 0.69 0.803768
Target:  5'- --uGGUCGCGGCcuuCUUCGCCUUcCGCu -3'
miRNA:   3'- cacUCAGUGCCGuu-GGGGUGGAA-GCG- -5'
5510 5' -55.5 NC_001798.1 + 106468 0.69 0.81259
Target:  5'- aUGcAGUCugGGCGGCgcggCCCGagguccaCUUCGCa -3'
miRNA:   3'- cAC-UCAGugCCGUUG----GGGUg------GAAGCG- -5'
5510 5' -55.5 NC_001798.1 + 1509 0.69 0.81259
Target:  5'- -cGAG--GCGGCGGCCCgGCCguccagCGCc -3'
miRNA:   3'- caCUCagUGCCGUUGGGgUGGaa----GCG- -5'
5510 5' -55.5 NC_001798.1 + 78547 0.69 0.82039
Target:  5'- -cGGGUCAUGGCGGgCCUgcgggaggcgcugGCCgcgCGCg -3'
miRNA:   3'- caCUCAGUGCCGUUgGGG-------------UGGaa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.