miRNA display CGI


Results 41 - 60 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 5' -55.5 NC_001798.1 + 60319 0.67 0.889877
Target:  5'- gGUGGGUUugGCGGUcucguCCCCgacggcguucaccACCUUCGUg -3'
miRNA:   3'- -CACUCAG--UGCCGuu---GGGG-------------UGGAAGCG- -5'
5510 5' -55.5 NC_001798.1 + 36443 0.67 0.906076
Target:  5'- -gGGGUCGCGGCGgggaaggaaggaaagACCCCGgaagCGCc -3'
miRNA:   3'- caCUCAGUGCCGU---------------UGGGGUggaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 81094 0.67 0.903582
Target:  5'- -gGGGacguucUCGCGGCGAgCgCCGCCgaCGCg -3'
miRNA:   3'- caCUC------AGUGCCGUUgG-GGUGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 39814 0.67 0.901686
Target:  5'- gGUG-GUCGCGGguGgcggaucgucggcuCCCCGCCg-CGCu -3'
miRNA:   3'- -CACuCAGUGCCguU--------------GGGGUGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 39684 0.67 0.897183
Target:  5'- ------gGCGGCGACCUCGCCgccCGCc -3'
miRNA:   3'- cacucagUGCCGUUGGGGUGGaa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 127663 0.67 0.897183
Target:  5'- ---uGUCACGcCAACCCgGCCgcgCGCc -3'
miRNA:   3'- cacuCAGUGCcGUUGGGgUGGaa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 43333 0.67 0.897183
Target:  5'- cUGGGggGCGGCAgugccGCCCC-CCgcgUCGUc -3'
miRNA:   3'- cACUCagUGCCGU-----UGGGGuGGa--AGCG- -5'
5510 5' -55.5 NC_001798.1 + 25899 0.67 0.897183
Target:  5'- cGUGGucUCGCGGCAGCacgCCUACCUggccUGCg -3'
miRNA:   3'- -CACUc-AGUGCCGUUG---GGGUGGAa---GCG- -5'
5510 5' -55.5 NC_001798.1 + 100422 0.67 0.890553
Target:  5'- cGUGGGcCAcCGGCGcuACUUCAUCUUCGg -3'
miRNA:   3'- -CACUCaGU-GCCGU--UGGGGUGGAAGCg -5'
5510 5' -55.5 NC_001798.1 + 15298 0.68 0.838038
Target:  5'- gGUG-GUCGCGGCGACCgaaACgUUgGCg -3'
miRNA:   3'- -CACuCAGUGCCGUUGGgg-UGgAAgCG- -5'
5510 5' -55.5 NC_001798.1 + 28953 0.68 0.838038
Target:  5'- -cGAGggCcCGGCGccGCCCCGCCgcucCGCc -3'
miRNA:   3'- caCUCa-GuGCCGU--UGGGGUGGaa--GCG- -5'
5510 5' -55.5 NC_001798.1 + 121698 0.68 0.838038
Target:  5'- -gGGGcCGCGGC--UCCCGCCgcCGCg -3'
miRNA:   3'- caCUCaGUGCCGuuGGGGUGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 134680 0.68 0.838038
Target:  5'- -cGGGUCACGGCGcggguGCUgCugCcgCGCg -3'
miRNA:   3'- caCUCAGUGCCGU-----UGGgGugGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 47819 0.68 0.838038
Target:  5'- -cGGGcucUCACGGCcccGGCCCCGCg--CGCg -3'
miRNA:   3'- caCUC---AGUGCCG---UUGGGGUGgaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 30452 0.68 0.846156
Target:  5'- -cGAGcgcCAgGGCAGCCCCACgccCGCc -3'
miRNA:   3'- caCUCa--GUgCCGUUGGGGUGgaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 115786 0.68 0.846156
Target:  5'- cGUG-GUCAaCGGCAACCugCC-CCUggCGCu -3'
miRNA:   3'- -CACuCAGU-GCCGUUGG--GGuGGAa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 146595 0.68 0.846156
Target:  5'- -cGGGcCGCGGCGccagcgGCCCaCGCCUccCGCc -3'
miRNA:   3'- caCUCaGUGCCGU------UGGG-GUGGAa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 153399 0.68 0.846156
Target:  5'- --cGGUCGCGGUcGgCCCGCUcgCGCg -3'
miRNA:   3'- cacUCAGUGCCGuUgGGGUGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 20260 0.68 0.854079
Target:  5'- -cGAGaUCugcagcaGGCGGCCCCACgUgCGCg -3'
miRNA:   3'- caCUC-AGug-----CCGUUGGGGUGgAaGCG- -5'
5510 5' -55.5 NC_001798.1 + 97758 0.68 0.836392
Target:  5'- -cGGGUCagcguccACGGCGaggugcuGCCCgCgACCUUCGCc -3'
miRNA:   3'- caCUCAG-------UGCCGU-------UGGG-G-UGGAAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.