miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 5' -55.5 NC_001798.1 + 3504 0.67 0.883695
Target:  5'- --uGGcCACGGCGGCCgCCACgUgCGCc -3'
miRNA:   3'- cacUCaGUGCCGUUGG-GGUGgAaGCG- -5'
5510 5' -55.5 NC_001798.1 + 109773 0.67 0.879473
Target:  5'- -cGAcGUCgcGCGGCGACCCaCGCCgaucuccgggccgCGCu -3'
miRNA:   3'- caCU-CAG--UGCCGUUGGG-GUGGaa-----------GCG- -5'
5510 5' -55.5 NC_001798.1 + 70574 0.67 0.876614
Target:  5'- -----cCACGGCGGCCCUgggGCCggugCGCg -3'
miRNA:   3'- cacucaGUGCCGUUGGGG---UGGaa--GCG- -5'
5510 5' -55.5 NC_001798.1 + 10972 0.67 0.876614
Target:  5'- -aGAGUCggGCGGCGACUCCuuaaaugCGCg -3'
miRNA:   3'- caCUCAG--UGCCGUUGGGGuggaa--GCG- -5'
5510 5' -55.5 NC_001798.1 + 84597 0.67 0.876614
Target:  5'- aGUcGGUCcCGGUGccgguGCCCCGCCgaagCGCg -3'
miRNA:   3'- -CAcUCAGuGCCGU-----UGGGGUGGaa--GCG- -5'
5510 5' -55.5 NC_001798.1 + 74787 0.67 0.869314
Target:  5'- -cGGGUcCACcGCAcgccGCCCCGCCccCGCa -3'
miRNA:   3'- caCUCA-GUGcCGU----UGGGGUGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 43453 0.67 0.869314
Target:  5'- -cGAGUCu--GCGACCCCGCaguaCGCg -3'
miRNA:   3'- caCUCAGugcCGUUGGGGUGgaa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 103030 0.67 0.869314
Target:  5'- -cGAGcUCGgccuCGGCGGCCUCGCg-UCGCa -3'
miRNA:   3'- caCUC-AGU----GCCGUUGGGGUGgaAGCG- -5'
5510 5' -55.5 NC_001798.1 + 151692 0.67 0.867082
Target:  5'- gGUGGGUCGCGGUgaaggucgucgucaGAgauUCCCACC-UCGg -3'
miRNA:   3'- -CACUCAGUGCCG--------------UU---GGGGUGGaAGCg -5'
5510 5' -55.5 NC_001798.1 + 105207 0.68 0.8618
Target:  5'- gGUGGGcgACGGCGcuGCCCCGuCCgcagCGCc -3'
miRNA:   3'- -CACUCagUGCCGU--UGGGGU-GGaa--GCG- -5'
5510 5' -55.5 NC_001798.1 + 20260 0.68 0.854079
Target:  5'- -cGAGaUCugcagcaGGCGGCCCCACgUgCGCg -3'
miRNA:   3'- caCUC-AGug-----CCGUUGGGGUGgAaGCG- -5'
5510 5' -55.5 NC_001798.1 + 30452 0.68 0.846156
Target:  5'- -cGAGcgcCAgGGCAGCCCCACgccCGCc -3'
miRNA:   3'- caCUCa--GUgCCGUUGGGGUGgaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 115786 0.68 0.846156
Target:  5'- cGUG-GUCAaCGGCAACCugCC-CCUggCGCu -3'
miRNA:   3'- -CACuCAGU-GCCGUUGG--GGuGGAa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 146595 0.68 0.846156
Target:  5'- -cGGGcCGCGGCGccagcgGCCCaCGCCUccCGCc -3'
miRNA:   3'- caCUCaGUGCCGU------UGGG-GUGGAa-GCG- -5'
5510 5' -55.5 NC_001798.1 + 153399 0.68 0.846156
Target:  5'- --cGGUCGCGGUcGgCCCGCUcgCGCg -3'
miRNA:   3'- cacUCAGUGCCGuUgGGGUGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 47819 0.68 0.838038
Target:  5'- -cGGGcucUCACGGCcccGGCCCCGCg--CGCg -3'
miRNA:   3'- caCUC---AGUGCCG---UUGGGGUGgaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 134680 0.68 0.838038
Target:  5'- -cGGGUCACGGCGcggguGCUgCugCcgCGCg -3'
miRNA:   3'- caCUCAGUGCCGU-----UGGgGugGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 121698 0.68 0.838038
Target:  5'- -gGGGcCGCGGC--UCCCGCCgcCGCg -3'
miRNA:   3'- caCUCaGUGCCGuuGGGGUGGaaGCG- -5'
5510 5' -55.5 NC_001798.1 + 28953 0.68 0.838038
Target:  5'- -cGAGggCcCGGCGccGCCCCGCCgcucCGCc -3'
miRNA:   3'- caCUCa-GuGCCGU--UGGGGUGGaa--GCG- -5'
5510 5' -55.5 NC_001798.1 + 15298 0.68 0.838038
Target:  5'- gGUG-GUCGCGGCGACCgaaACgUUgGCg -3'
miRNA:   3'- -CACuCAGUGCCGUUGGgg-UGgAAgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.