Results 1 - 20 of 198 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5511 | 3' | -53.9 | NC_001798.1 | + | 43082 | 0.66 | 0.974883 |
Target: 5'- cCGGgcucGGGCGccGCCGCCGcguccgcgaccACGgucGCUUCCg -3' miRNA: 3'- -GCU----UCUGCucCGGCGGU-----------UGC---UGAAGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 105743 | 0.66 | 0.974883 |
Target: 5'- -cGGGugGGuGUCGCCGGCGACaaaugagUCCc -3' miRNA: 3'- gcUUCugCUcCGGCGGUUGCUGa------AGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 23476 | 0.66 | 0.974883 |
Target: 5'- aCGAcGACGAcGCCGCCcGCGcCcccgCCa -3' miRNA: 3'- -GCUuCUGCUcCGGCGGuUGCuGaa--GG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 72672 | 0.66 | 0.974883 |
Target: 5'- aCGAGGguaACGugcuGGCCGUCGuGCGGCgggaaaUCCa -3' miRNA: 3'- -GCUUC---UGCu---CCGGCGGU-UGCUGa-----AGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 667 | 0.66 | 0.974883 |
Target: 5'- gGGAGACGu-GCCGCCcgccCGACccCCg -3' miRNA: 3'- gCUUCUGCucCGGCGGuu--GCUGaaGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 138503 | 0.66 | 0.974883 |
Target: 5'- gGAGGGCGuGGCaCGC-GACGAUcUCg -3' miRNA: 3'- gCUUCUGCuCCG-GCGgUUGCUGaAGg -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 39153 | 0.66 | 0.974883 |
Target: 5'- aGAGGcuCG-GGCCGUgAGCGACcaggguUUCCc -3' miRNA: 3'- gCUUCu-GCuCCGGCGgUUGCUG------AAGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 9884 | 0.66 | 0.974883 |
Target: 5'- uGAcGGugGAGGCCaGCCAcgccaaccccGgGACcggUUCCa -3' miRNA: 3'- gCU-UCugCUCCGG-CGGU----------UgCUG---AAGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 83277 | 0.66 | 0.972211 |
Target: 5'- gGggGucuUGGGGUCGCgAACGACa--- -3' miRNA: 3'- gCuuCu--GCUCCGGCGgUUGCUGaagg -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 55809 | 0.66 | 0.972211 |
Target: 5'- aCGggGGUGGGGUC-CCAcGCGACgcaUCCc -3' miRNA: 3'- -GCuuCUGCUCCGGcGGU-UGCUGa--AGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 131547 | 0.66 | 0.972211 |
Target: 5'- cCGGAcGCGAGcGCC-CCGACGGC--CCg -3' miRNA: 3'- -GCUUcUGCUC-CGGcGGUUGCUGaaGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 97570 | 0.66 | 0.971933 |
Target: 5'- gCGAGGACGGggagcgcGGCCccgaGCCAGgGGCgcaggggCCg -3' miRNA: 3'- -GCUUCUGCU-------CCGG----CGGUUgCUGaa-----GG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 78566 | 0.66 | 0.969341 |
Target: 5'- gGGAGGCGcuGGCCGCgcGCGAgcgCCg -3' miRNA: 3'- gCUUCUGCu-CCGGCGguUGCUgaaGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 86022 | 0.66 | 0.969341 |
Target: 5'- cCGGAGACGuGGGCguaCGCCGACcugaUCCu -3' miRNA: 3'- -GCUUCUGC-UCCG---GCGGUUGcugaAGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 94565 | 0.66 | 0.969341 |
Target: 5'- -----cCGAGGCCGCCAaggcGCGGgUcgCCa -3' miRNA: 3'- gcuucuGCUCCGGCGGU----UGCUgAa-GG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 111950 | 0.66 | 0.969341 |
Target: 5'- gCGAAGcGCGAGGaaaUGUUGACGAUcgCCg -3' miRNA: 3'- -GCUUC-UGCUCCg--GCGGUUGCUGaaGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 147505 | 0.66 | 0.969341 |
Target: 5'- gGggGGgGGGGgCGCCuGCGugUgUCUc -3' miRNA: 3'- gCuuCUgCUCCgGCGGuUGCugA-AGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 29379 | 0.66 | 0.969341 |
Target: 5'- cCGggGGCGggcaccacucaGGGCCgcGCCGGCGGggcgCCg -3' miRNA: 3'- -GCuuCUGC-----------UCCGG--CGGUUGCUgaa-GG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 56416 | 0.66 | 0.969043 |
Target: 5'- gCGggGGCuGGuGGCUGCCGugGuGCUcuaggaccggaauUCCg -3' miRNA: 3'- -GCuuCUG-CU-CCGGCGGUugC-UGA-------------AGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 91328 | 0.66 | 0.966266 |
Target: 5'- --cAGACGccGCCcgaGCCGcCGGCUUCCc -3' miRNA: 3'- gcuUCUGCucCGG---CGGUuGCUGAAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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