miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5511 3' -53.9 NC_001798.1 + 105743 0.66 0.974883
Target:  5'- -cGGGugGGuGUCGCCGGCGACaaaugagUCCc -3'
miRNA:   3'- gcUUCugCUcCGGCGGUUGCUGa------AGG- -5'
5511 3' -53.9 NC_001798.1 + 23476 0.66 0.974883
Target:  5'- aCGAcGACGAcGCCGCCcGCGcCcccgCCa -3'
miRNA:   3'- -GCUuCUGCUcCGGCGGuUGCuGaa--GG- -5'
5511 3' -53.9 NC_001798.1 + 72672 0.66 0.974883
Target:  5'- aCGAGGguaACGugcuGGCCGUCGuGCGGCgggaaaUCCa -3'
miRNA:   3'- -GCUUC---UGCu---CCGGCGGU-UGCUGa-----AGG- -5'
5511 3' -53.9 NC_001798.1 + 667 0.66 0.974883
Target:  5'- gGGAGACGu-GCCGCCcgccCGACccCCg -3'
miRNA:   3'- gCUUCUGCucCGGCGGuu--GCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 138503 0.66 0.974883
Target:  5'- gGAGGGCGuGGCaCGC-GACGAUcUCg -3'
miRNA:   3'- gCUUCUGCuCCG-GCGgUUGCUGaAGg -5'
5511 3' -53.9 NC_001798.1 + 39153 0.66 0.974883
Target:  5'- aGAGGcuCG-GGCCGUgAGCGACcaggguUUCCc -3'
miRNA:   3'- gCUUCu-GCuCCGGCGgUUGCUG------AAGG- -5'
5511 3' -53.9 NC_001798.1 + 9884 0.66 0.974883
Target:  5'- uGAcGGugGAGGCCaGCCAcgccaaccccGgGACcggUUCCa -3'
miRNA:   3'- gCU-UCugCUCCGG-CGGU----------UgCUG---AAGG- -5'
5511 3' -53.9 NC_001798.1 + 43082 0.66 0.974883
Target:  5'- cCGGgcucGGGCGccGCCGCCGcguccgcgaccACGgucGCUUCCg -3'
miRNA:   3'- -GCU----UCUGCucCGGCGGU-----------UGC---UGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 83277 0.66 0.972211
Target:  5'- gGggGucuUGGGGUCGCgAACGACa--- -3'
miRNA:   3'- gCuuCu--GCUCCGGCGgUUGCUGaagg -5'
5511 3' -53.9 NC_001798.1 + 55809 0.66 0.972211
Target:  5'- aCGggGGUGGGGUC-CCAcGCGACgcaUCCc -3'
miRNA:   3'- -GCuuCUGCUCCGGcGGU-UGCUGa--AGG- -5'
5511 3' -53.9 NC_001798.1 + 131547 0.66 0.972211
Target:  5'- cCGGAcGCGAGcGCC-CCGACGGC--CCg -3'
miRNA:   3'- -GCUUcUGCUC-CGGcGGUUGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 97570 0.66 0.971933
Target:  5'- gCGAGGACGGggagcgcGGCCccgaGCCAGgGGCgcaggggCCg -3'
miRNA:   3'- -GCUUCUGCU-------CCGG----CGGUUgCUGaa-----GG- -5'
5511 3' -53.9 NC_001798.1 + 29379 0.66 0.969341
Target:  5'- cCGggGGCGggcaccacucaGGGCCgcGCCGGCGGggcgCCg -3'
miRNA:   3'- -GCuuCUGC-----------UCCGG--CGGUUGCUgaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 147505 0.66 0.969341
Target:  5'- gGggGGgGGGGgCGCCuGCGugUgUCUc -3'
miRNA:   3'- gCuuCUgCUCCgGCGGuUGCugA-AGG- -5'
5511 3' -53.9 NC_001798.1 + 111950 0.66 0.969341
Target:  5'- gCGAAGcGCGAGGaaaUGUUGACGAUcgCCg -3'
miRNA:   3'- -GCUUC-UGCUCCg--GCGGUUGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 94565 0.66 0.969341
Target:  5'- -----cCGAGGCCGCCAaggcGCGGgUcgCCa -3'
miRNA:   3'- gcuucuGCUCCGGCGGU----UGCUgAa-GG- -5'
5511 3' -53.9 NC_001798.1 + 86022 0.66 0.969341
Target:  5'- cCGGAGACGuGGGCguaCGCCGACcugaUCCu -3'
miRNA:   3'- -GCUUCUGC-UCCG---GCGGUUGcugaAGG- -5'
5511 3' -53.9 NC_001798.1 + 78566 0.66 0.969341
Target:  5'- gGGAGGCGcuGGCCGCgcGCGAgcgCCg -3'
miRNA:   3'- gCUUCUGCu-CCGGCGguUGCUgaaGG- -5'
5511 3' -53.9 NC_001798.1 + 56416 0.66 0.969043
Target:  5'- gCGggGGCuGGuGGCUGCCGugGuGCUcuaggaccggaauUCCg -3'
miRNA:   3'- -GCuuCUG-CU-CCGGCGGUugC-UGA-------------AGG- -5'
5511 3' -53.9 NC_001798.1 + 154124 0.66 0.966266
Target:  5'- cCGgcGGCGGGGaCC-CCGGCGGCg--- -3'
miRNA:   3'- -GCuuCUGCUCC-GGcGGUUGCUGaagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.