Results 1 - 20 of 70 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5512 | 3' | -58.4 | NC_001798.1 | + | 45164 | 0.66 | 0.840899 |
Target: 5'- --cCCGGGacucgaGGGCUCCAccaucGACGggGc -3' miRNA: 3'- gacGGCCCaug---CCCGAGGU-----CUGCuuC- -5' |
|||||||
5512 | 3' | -58.4 | NC_001798.1 | + | 31786 | 0.66 | 0.840899 |
Target: 5'- -cGCgCGGGU-CGGGagggCCGGGCGcGGa -3' miRNA: 3'- gaCG-GCCCAuGCCCga--GGUCUGCuUC- -5' |
|||||||
5512 | 3' | -58.4 | NC_001798.1 | + | 31044 | 0.66 | 0.840899 |
Target: 5'- -gGUCGGG--CGGGggUCGGGCGggGg -3' miRNA: 3'- gaCGGCCCauGCCCgaGGUCUGCuuC- -5' |
|||||||
5512 | 3' | -58.4 | NC_001798.1 | + | 152219 | 0.66 | 0.832838 |
Target: 5'- gUGCCGGGggucugccgcgGCGGccGCUCgGGGcCGggGu -3' miRNA: 3'- gACGGCCCa----------UGCC--CGAGgUCU-GCuuC- -5' |
|||||||
5512 | 3' | -58.4 | NC_001798.1 | + | 146296 | 0.66 | 0.832838 |
Target: 5'- -aGCgGGGagUGGGCggCCGGGCGGGa -3' miRNA: 3'- gaCGgCCCauGCCCGa-GGUCUGCUUc -5' |
|||||||
5512 | 3' | -58.4 | NC_001798.1 | + | 146085 | 0.66 | 0.824602 |
Target: 5'- -gGuCCGGGgcgagGCGGGC---GGGCGAAGg -3' miRNA: 3'- gaC-GGCCCa----UGCCCGaggUCUGCUUC- -5' |
|||||||
5512 | 3' | -58.4 | NC_001798.1 | + | 41463 | 0.66 | 0.824602 |
Target: 5'- -cGCCGGGgggggcggucgGCGGGC-CCAGAa---- -3' miRNA: 3'- gaCGGCCCa----------UGCCCGaGGUCUgcuuc -5' |
|||||||
5512 | 3' | -58.4 | NC_001798.1 | + | 24892 | 0.66 | 0.823769 |
Target: 5'- -cGCCGGGgcccUGGGC-CCGGcgcugccGCGGAGc -3' miRNA: 3'- gaCGGCCCau--GCCCGaGGUC-------UGCUUC- -5' |
|||||||
5512 | 3' | -58.4 | NC_001798.1 | + | 2263 | 0.66 | 0.81958 |
Target: 5'- -cGCCGGGggGCgGGGCggcgcagcgcgcggCCAG-CGAGGc -3' miRNA: 3'- gaCGGCCCa-UG-CCCGa-------------GGUCuGCUUC- -5' |
|||||||
5512 | 3' | -58.4 | NC_001798.1 | + | 26820 | 0.66 | 0.816198 |
Target: 5'- -gGCgGGGgucggGCGGGCgggggUCGGGCGGGc -3' miRNA: 3'- gaCGgCCCa----UGCCCGa----GGUCUGCUUc -5' |
|||||||
5512 | 3' | -58.4 | NC_001798.1 | + | 26850 | 0.66 | 0.816198 |
Target: 5'- -nGCgGGGgucggGCGGGCgggggUCGGGCGGGc -3' miRNA: 3'- gaCGgCCCa----UGCCCGa----GGUCUGCUUc -5' |
|||||||
5512 | 3' | -58.4 | NC_001798.1 | + | 26880 | 0.66 | 0.816198 |
Target: 5'- -nGCgGGGgucggGCGGGCgggggUCGGGCGGGc -3' miRNA: 3'- gaCGgCCCa----UGCCCGa----GGUCUGCUUc -5' |
|||||||
5512 | 3' | -58.4 | NC_001798.1 | + | 26969 | 0.66 | 0.816198 |
Target: 5'- -gGCgGGGgucggGCGGGCgggggUCGGGCGGGc -3' miRNA: 3'- gaCGgCCCa----UGCCCGa----GGUCUGCUUc -5' |
|||||||
5512 | 3' | -58.4 | NC_001798.1 | + | 26999 | 0.66 | 0.816198 |
Target: 5'- -nGCgGGGgucggGCGGGCgggggUCGGGCGGGc -3' miRNA: 3'- gaCGgCCCa----UGCCCGa----GGUCUGCUUc -5' |
|||||||
5512 | 3' | -58.4 | NC_001798.1 | + | 106117 | 0.66 | 0.816198 |
Target: 5'- -cGCCGGGUcUGcGGUUCCGG-CGGc- -3' miRNA: 3'- gaCGGCCCAuGC-CCGAGGUCuGCUuc -5' |
|||||||
5512 | 3' | -58.4 | NC_001798.1 | + | 121693 | 0.66 | 0.816198 |
Target: 5'- -gGCUGGGggcCGcGGCUCCcgccgccgcGACGGAGg -3' miRNA: 3'- gaCGGCCCau-GC-CCGAGGu--------CUGCUUC- -5' |
|||||||
5512 | 3' | -58.4 | NC_001798.1 | + | 48155 | 0.66 | 0.816198 |
Target: 5'- -cGCCGcGGU-CGGGCgCCuGGCGGc- -3' miRNA: 3'- gaCGGC-CCAuGCCCGaGGuCUGCUuc -5' |
|||||||
5512 | 3' | -58.4 | NC_001798.1 | + | 13486 | 0.66 | 0.807634 |
Target: 5'- aUGCUGGGgggcuggaACGGGUccUCCAGGCucGGc -3' miRNA: 3'- gACGGCCCa-------UGCCCG--AGGUCUGcuUC- -5' |
|||||||
5512 | 3' | -58.4 | NC_001798.1 | + | 116182 | 0.66 | 0.807634 |
Target: 5'- cCUGCCGGGcccggagcuggGCGGGCaggCuCAGGCcGAGc -3' miRNA: 3'- -GACGGCCCa----------UGCCCGa--G-GUCUGcUUC- -5' |
|||||||
5512 | 3' | -58.4 | NC_001798.1 | + | 51482 | 0.66 | 0.798917 |
Target: 5'- gUGUCGGGccCGGaGCUgCAGGCGGc- -3' miRNA: 3'- gACGGCCCauGCC-CGAgGUCUGCUuc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home