Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5512 | 3' | -58.4 | NC_001798.1 | + | 16067 | 0.67 | 0.743867 |
Target: 5'- -cGCUGGGggcgGCGGGCgUCuGugGggGc -3' miRNA: 3'- gaCGGCCCa---UGCCCGaGGuCugCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 152273 | 0.67 | 0.743867 |
Target: 5'- gUGCCGGGccgGGGUUCCAuGAgcCGggGu -3' miRNA: 3'- gACGGCCCaugCCCGAGGU-CU--GCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 104055 | 0.67 | 0.771011 |
Target: 5'- uUGUgCGGGUGCGGuugaugaGCUCCAGcGCGGu- -3' miRNA: 3'- gACG-GCCCAUGCC-------CGAGGUC-UGCUuc -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 6404 | 0.67 | 0.781057 |
Target: 5'- -gGCCGGGgggACGGGg---GGACGggGg -3' miRNA: 3'- gaCGGCCCa--UGCCCgaggUCUGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 10391 | 0.67 | 0.788266 |
Target: 5'- -gGUCGGGgucggcacagggGCGGGCUCCAcGACc--- -3' miRNA: 3'- gaCGGCCCa-----------UGCCCGAGGU-CUGcuuc -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 45993 | 0.67 | 0.790055 |
Target: 5'- uUGUCGGGg--GGGaUCCAGGgGAGGg -3' miRNA: 3'- gACGGCCCaugCCCgAGGUCUgCUUC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 6545 | 0.67 | 0.790055 |
Target: 5'- -gGCCGGGgggACGGGgggacgggCCggggGGACGggGg -3' miRNA: 3'- gaCGGCCCa--UGCCCga------GG----UCUGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 6587 | 0.67 | 0.790055 |
Target: 5'- -gGCCGGGgggACGGGgggacgggCCggggGGACGggGg -3' miRNA: 3'- gaCGGCCCa--UGCCCga------GG----UCUGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 75865 | 0.67 | 0.790055 |
Target: 5'- uUGcCCGGGgcgaagagaUGCGGG-UCgAGGCGGAGg -3' miRNA: 3'- gAC-GGCCC---------AUGCCCgAGgUCUGCUUC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 26931 | 0.68 | 0.695334 |
Target: 5'- -gGUCGGGcggGCGGGgUCgggCGGGCGggGg -3' miRNA: 3'- gaCGGCCCa--UGCCCgAG---GUCUGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 88053 | 0.68 | 0.695334 |
Target: 5'- -cGCUGGGgggGCGGGCUCguccccugGGGCGgcGg -3' miRNA: 3'- gaCGGCCCa--UGCCCGAGg-------UCUGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 83784 | 0.68 | 0.705176 |
Target: 5'- -cGCCGGG---GGGC-CCGGACGcGGg -3' miRNA: 3'- gaCGGCCCaugCCCGaGGUCUGCuUC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 61462 | 0.68 | 0.705176 |
Target: 5'- -cGCCGGGgccucCGGGCcCCGGAgGGc- -3' miRNA: 3'- gaCGGCCCau---GCCCGaGGUCUgCUuc -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 6268 | 0.68 | 0.724675 |
Target: 5'- -gGCCGGGgggACGGGCcggggggaCGGGcCGggGg -3' miRNA: 3'- gaCGGCCCa--UGCCCGag------GUCU-GCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 6307 | 0.68 | 0.724675 |
Target: 5'- -gGCCGGGgggACGGGCcggggggaCGGGcCGggGg -3' miRNA: 3'- gaCGGCCCa--UGCCCGag------GUCU-GCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 132146 | 0.69 | 0.663539 |
Target: 5'- -cGCCGGGggccgGCGGGCggggcgccccccCCGGACGc-- -3' miRNA: 3'- gaCGGCCCa----UGCCCGa-----------GGUCUGCuuc -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 64502 | 0.69 | 0.685441 |
Target: 5'- -cGCCGGaGgggguggGCGGGgUCCAGGC-AAGg -3' miRNA: 3'- gaCGGCC-Ca------UGCCCgAGGUCUGcUUC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 25608 | 0.69 | 0.685441 |
Target: 5'- -cGCCGGGgGCGGGCcCCcccCGGAGu -3' miRNA: 3'- gaCGGCCCaUGCCCGaGGucuGCUUC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 5905 | 0.69 | 0.675506 |
Target: 5'- -cGCCccgagGCGGGC-CCGGACGggGg -3' miRNA: 3'- gaCGGccca-UGCCCGaGGUCUGCuuC- -5' |
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5512 | 3' | -58.4 | NC_001798.1 | + | 102214 | 0.69 | 0.665537 |
Target: 5'- -cGCCGGGagucgaccggGCGcGGCUCgGGGCGGGc -3' miRNA: 3'- gaCGGCCCa---------UGC-CCGAGgUCUGCUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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