Results 1 - 20 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5514 | 5' | -58.9 | NC_001798.1 | + | 77585 | 0.66 | 0.813221 |
Target: 5'- --cCCaGCGGGC-GCGccCUGCAGGaGCu -3' miRNA: 3'- ccaGG-CGCCCGuCGUa-GACGUCCaCG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 147160 | 0.66 | 0.813221 |
Target: 5'- gGGUCC-CGGGUAGCcgCccgGCGccGG-GCg -3' miRNA: 3'- -CCAGGcGCCCGUCGuaGa--CGU--CCaCG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 31336 | 0.66 | 0.813221 |
Target: 5'- cGGcCgGCGGGgGGCGcgcGCAGGcGCg -3' miRNA: 3'- -CCaGgCGCCCgUCGUagaCGUCCaCG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 9157 | 0.66 | 0.80459 |
Target: 5'- cGGcgCCGCccgcgccgggGGGCAGgGUCUcugGCGGGUccccGCg -3' miRNA: 3'- -CCa-GGCG----------CCCGUCgUAGA---CGUCCA----CG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 36276 | 0.66 | 0.80459 |
Target: 5'- cGGg--GUGGGCGGCGgggGgGGGUGCc -3' miRNA: 3'- -CCaggCGCCCGUCGUagaCgUCCACG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 48716 | 0.66 | 0.80459 |
Target: 5'- aGGUuuG-GGGCGGCA-CUG-GGGUGa -3' miRNA: 3'- -CCAggCgCCCGUCGUaGACgUCCACg -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 27382 | 0.66 | 0.80459 |
Target: 5'- uGGUCUGCgaGGGCgAGC----GguGGUGCg -3' miRNA: 3'- -CCAGGCG--CCCG-UCGuagaCguCCACG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 51803 | 0.66 | 0.803718 |
Target: 5'- -aUCgUGCGGGUGGCgaucaacggguggGUCUGCGGGacGCg -3' miRNA: 3'- ccAG-GCGCCCGUCG-------------UAGACGUCCa-CG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 30944 | 0.66 | 0.795809 |
Target: 5'- gGGUCgGgCGGGgGGCGg--GCGGGggucggGCg -3' miRNA: 3'- -CCAGgC-GCCCgUCGUagaCGUCCa-----CG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 81043 | 0.66 | 0.795809 |
Target: 5'- cGGUuuGUGGGCAGCGag-GCcaccgAGGaGCu -3' miRNA: 3'- -CCAggCGCCCGUCGUagaCG-----UCCaCG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 104999 | 0.66 | 0.795809 |
Target: 5'- cGGcgCUGCGGGUGGUcagggggaaGUCcGCGauGGUGCg -3' miRNA: 3'- -CCa-GGCGCCCGUCG---------UAGaCGU--CCACG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 65073 | 0.66 | 0.794923 |
Target: 5'- --gCCGCGGGUgcacuggGGCGUgggUUGUAGcGUGCu -3' miRNA: 3'- ccaGGCGCCCG-------UCGUA---GACGUC-CACG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 152226 | 0.66 | 0.786885 |
Target: 5'- gGGUCUGcCGcGGCGGCcgCU-CGGG-GCc -3' miRNA: 3'- -CCAGGC-GC-CCGUCGuaGAcGUCCaCG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 56047 | 0.66 | 0.786885 |
Target: 5'- --aCCGCGGGCuugaaUAUCgggGCGGG-GCg -3' miRNA: 3'- ccaGGCGCCCGuc---GUAGa--CGUCCaCG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 2993 | 0.66 | 0.777828 |
Target: 5'- cGGcCCGCGGGCcccgggcgcgggGGCG-CgGCGGGccggGCu -3' miRNA: 3'- -CCaGGCGCCCG------------UCGUaGaCGUCCa---CG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 69 | 0.66 | 0.768645 |
Target: 5'- ----gGCGGGCGGCGgcgGCGGGcggGCg -3' miRNA: 3'- ccaggCGCCCGUCGUagaCGUCCa--CG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 154407 | 0.66 | 0.768645 |
Target: 5'- ----gGCGGGCGGCGgcgGCGGGcggGCg -3' miRNA: 3'- ccaggCGCCCGUCGUagaCGUCCa--CG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 72327 | 0.67 | 0.759345 |
Target: 5'- cGGcCCGgGGGguGC---UGCAGGaGCu -3' miRNA: 3'- -CCaGGCgCCCguCGuagACGUCCaCG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 150859 | 0.67 | 0.759345 |
Target: 5'- gGGUCgCgGCGGGCugggAGguUCcGCGGGUcGCc -3' miRNA: 3'- -CCAG-G-CGCCCG----UCguAGaCGUCCA-CG- -5' |
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5514 | 5' | -58.9 | NC_001798.1 | + | 29910 | 0.67 | 0.759345 |
Target: 5'- gGGUggUCGCGGGCGGUGggcUCggggGCGGGacGCu -3' miRNA: 3'- -CCA--GGCGCCCGUCGU---AGa---CGUCCa-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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