miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5514 5' -58.9 NC_001798.1 + 77585 0.66 0.813221
Target:  5'- --cCCaGCGGGC-GCGccCUGCAGGaGCu -3'
miRNA:   3'- ccaGG-CGCCCGuCGUa-GACGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 147160 0.66 0.813221
Target:  5'- gGGUCC-CGGGUAGCcgCccgGCGccGG-GCg -3'
miRNA:   3'- -CCAGGcGCCCGUCGuaGa--CGU--CCaCG- -5'
5514 5' -58.9 NC_001798.1 + 31336 0.66 0.813221
Target:  5'- cGGcCgGCGGGgGGCGcgcGCAGGcGCg -3'
miRNA:   3'- -CCaGgCGCCCgUCGUagaCGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 9157 0.66 0.80459
Target:  5'- cGGcgCCGCccgcgccgggGGGCAGgGUCUcugGCGGGUccccGCg -3'
miRNA:   3'- -CCa-GGCG----------CCCGUCgUAGA---CGUCCA----CG- -5'
5514 5' -58.9 NC_001798.1 + 36276 0.66 0.80459
Target:  5'- cGGg--GUGGGCGGCGgggGgGGGUGCc -3'
miRNA:   3'- -CCaggCGCCCGUCGUagaCgUCCACG- -5'
5514 5' -58.9 NC_001798.1 + 48716 0.66 0.80459
Target:  5'- aGGUuuG-GGGCGGCA-CUG-GGGUGa -3'
miRNA:   3'- -CCAggCgCCCGUCGUaGACgUCCACg -5'
5514 5' -58.9 NC_001798.1 + 27382 0.66 0.80459
Target:  5'- uGGUCUGCgaGGGCgAGC----GguGGUGCg -3'
miRNA:   3'- -CCAGGCG--CCCG-UCGuagaCguCCACG- -5'
5514 5' -58.9 NC_001798.1 + 51803 0.66 0.803718
Target:  5'- -aUCgUGCGGGUGGCgaucaacggguggGUCUGCGGGacGCg -3'
miRNA:   3'- ccAG-GCGCCCGUCG-------------UAGACGUCCa-CG- -5'
5514 5' -58.9 NC_001798.1 + 30944 0.66 0.795809
Target:  5'- gGGUCgGgCGGGgGGCGg--GCGGGggucggGCg -3'
miRNA:   3'- -CCAGgC-GCCCgUCGUagaCGUCCa-----CG- -5'
5514 5' -58.9 NC_001798.1 + 81043 0.66 0.795809
Target:  5'- cGGUuuGUGGGCAGCGag-GCcaccgAGGaGCu -3'
miRNA:   3'- -CCAggCGCCCGUCGUagaCG-----UCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 104999 0.66 0.795809
Target:  5'- cGGcgCUGCGGGUGGUcagggggaaGUCcGCGauGGUGCg -3'
miRNA:   3'- -CCa-GGCGCCCGUCG---------UAGaCGU--CCACG- -5'
5514 5' -58.9 NC_001798.1 + 65073 0.66 0.794923
Target:  5'- --gCCGCGGGUgcacuggGGCGUgggUUGUAGcGUGCu -3'
miRNA:   3'- ccaGGCGCCCG-------UCGUA---GACGUC-CACG- -5'
5514 5' -58.9 NC_001798.1 + 152226 0.66 0.786885
Target:  5'- gGGUCUGcCGcGGCGGCcgCU-CGGG-GCc -3'
miRNA:   3'- -CCAGGC-GC-CCGUCGuaGAcGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 56047 0.66 0.786885
Target:  5'- --aCCGCGGGCuugaaUAUCgggGCGGG-GCg -3'
miRNA:   3'- ccaGGCGCCCGuc---GUAGa--CGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 2993 0.66 0.777828
Target:  5'- cGGcCCGCGGGCcccgggcgcgggGGCG-CgGCGGGccggGCu -3'
miRNA:   3'- -CCaGGCGCCCG------------UCGUaGaCGUCCa---CG- -5'
5514 5' -58.9 NC_001798.1 + 69 0.66 0.768645
Target:  5'- ----gGCGGGCGGCGgcgGCGGGcggGCg -3'
miRNA:   3'- ccaggCGCCCGUCGUagaCGUCCa--CG- -5'
5514 5' -58.9 NC_001798.1 + 154407 0.66 0.768645
Target:  5'- ----gGCGGGCGGCGgcgGCGGGcggGCg -3'
miRNA:   3'- ccaggCGCCCGUCGUagaCGUCCa--CG- -5'
5514 5' -58.9 NC_001798.1 + 72327 0.67 0.759345
Target:  5'- cGGcCCGgGGGguGC---UGCAGGaGCu -3'
miRNA:   3'- -CCaGGCgCCCguCGuagACGUCCaCG- -5'
5514 5' -58.9 NC_001798.1 + 150859 0.67 0.759345
Target:  5'- gGGUCgCgGCGGGCugggAGguUCcGCGGGUcGCc -3'
miRNA:   3'- -CCAG-G-CGCCCG----UCguAGaCGUCCA-CG- -5'
5514 5' -58.9 NC_001798.1 + 29910 0.67 0.759345
Target:  5'- gGGUggUCGCGGGCGGUGggcUCggggGCGGGacGCu -3'
miRNA:   3'- -CCA--GGCGCCCGUCGU---AGa---CGUCCa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.