Results 21 - 40 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5517 | 5' | -61.5 | NC_001798.1 | + | 69842 | 0.7 | 0.496781 |
Target: 5'- uUGGUCCGGGccGcCGUCGGccGCCCCc- -3' miRNA: 3'- gGCUAGGCCCa-C-GCAGCCa-CGGGGcg -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 147212 | 0.7 | 0.505889 |
Target: 5'- uCCGGcCCGGGcccccgGCGgagcgCGGggGCCCCGg -3' miRNA: 3'- -GGCUaGGCCCa-----CGCa----GCCa-CGGGGCg -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 146486 | 0.69 | 0.524314 |
Target: 5'- uCCGGggCCGGGccGgGcCGGcaacGCCCCGCg -3' miRNA: 3'- -GGCUa-GGCCCa-CgCaGCCa---CGGGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 86073 | 0.69 | 0.524314 |
Target: 5'- cCCGccGUCUGGGa--GUCGGgGCCCCGg -3' miRNA: 3'- -GGC--UAGGCCCacgCAGCCaCGGGGCg -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 27511 | 0.69 | 0.524314 |
Target: 5'- gCCGcgCgGGG-GCGcccgCGGgaaggcaGCCCCGCg -3' miRNA: 3'- -GGCuaGgCCCaCGCa---GCCa------CGGGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 68511 | 0.69 | 0.542988 |
Target: 5'- uUCGGUUCGGGggaggggGCGUCauguccucgGCCCCGUg -3' miRNA: 3'- -GGCUAGGCCCa------CGCAGcca------CGGGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 107456 | 0.69 | 0.542988 |
Target: 5'- cCCGAccCCGaGGacgGCG-CGGggucucUGCCCCGCa -3' miRNA: 3'- -GGCUa-GGC-CCa--CGCaGCC------ACGGGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 1590 | 0.69 | 0.552408 |
Target: 5'- gCCGAagCGcGUGCGcacgCGGUaccgcacguugGCCCCGCg -3' miRNA: 3'- -GGCUagGCcCACGCa---GCCA-----------CGGGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 150265 | 0.69 | 0.552408 |
Target: 5'- cCCGAcCCGcGcGCGUCGGUcGCgCCUGCc -3' miRNA: 3'- -GGCUaGGCcCaCGCAGCCA-CG-GGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 150205 | 0.69 | 0.552408 |
Target: 5'- gCGGcaCCGGGgGUGUUGGUGCCgCGg -3' miRNA: 3'- gGCUa-GGCCCaCGCAGCCACGGgGCg -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 15251 | 0.69 | 0.560928 |
Target: 5'- -gGGUCCguuggggGGGUaCGggCGGUGCCCCGg -3' miRNA: 3'- ggCUAGG-------CCCAcGCa-GCCACGGGGCg -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 31144 | 0.69 | 0.571389 |
Target: 5'- cCCGG-CgCGGGgGCGgCGGUGCgggggcgaCCCGCg -3' miRNA: 3'- -GGCUaG-GCCCaCGCaGCCACG--------GGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 75993 | 0.69 | 0.571389 |
Target: 5'- gCCGccCCGGGcgccgGCGgcaGG-GCCCCGUg -3' miRNA: 3'- -GGCuaGGCCCa----CGCag-CCaCGGGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 135332 | 0.68 | 0.580939 |
Target: 5'- cCUGGUgCCGGacgcGUGCGaCGccUGCCCCGCg -3' miRNA: 3'- -GGCUA-GGCC----CACGCaGCc-ACGGGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 131338 | 0.68 | 0.580939 |
Target: 5'- cCCGcgccCCGGGcGCGacgUCGGcGCCCgGCg -3' miRNA: 3'- -GGCua--GGCCCaCGC---AGCCaCGGGgCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 2412 | 0.68 | 0.590522 |
Target: 5'- gCCGAgggcgCCGGcGUGUGgcuGG-GCCCCGg -3' miRNA: 3'- -GGCUa----GGCC-CACGCag-CCaCGGGGCg -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 139283 | 0.68 | 0.598208 |
Target: 5'- gCCGuccUCgGGGgcgcauagcgccGCGUCGccGCCCCGCg -3' miRNA: 3'- -GGCu--AGgCCCa-----------CGCAGCcaCGGGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 27929 | 0.68 | 0.600132 |
Target: 5'- cCCGccgCCGGGgucccgGCGcCGGccgcGCCCCGg -3' miRNA: 3'- -GGCua-GGCCCa-----CGCaGCCa---CGGGGCg -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 43638 | 0.68 | 0.609763 |
Target: 5'- cCCGAcCCaGGG-GCGagGGcUGCUCCGUg -3' miRNA: 3'- -GGCUaGG-CCCaCGCagCC-ACGGGGCG- -5' |
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5517 | 5' | -61.5 | NC_001798.1 | + | 43018 | 0.68 | 0.619409 |
Target: 5'- gCCGc-CCGGGgggaGCG-CGGgGCCCCGg -3' miRNA: 3'- -GGCuaGGCCCa---CGCaGCCaCGGGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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