miRNA display CGI


Results 1 - 20 of 477 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5520 3' -64.1 NC_001798.1 + 25607 0.65 0.622287
Target:  5'- -gCGCCGgGGGCGggcccccccCGGagugguccgccgaGCGCGgCGGGCu -3'
miRNA:   3'- cgGCGGUgCCUGC---------GCC-------------UGCGC-GCCCG- -5'
5520 3' -64.1 NC_001798.1 + 15430 0.65 0.620379
Target:  5'- gGuuGUUugGGGCcccggagucgugggGCGGGggguCGCGUGGGUa -3'
miRNA:   3'- -CggCGGugCCUG--------------CGCCU----GCGCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 4124 0.66 0.613706
Target:  5'- gGCUcgGCCG-GGGCGCcgcccccgGGGCccuCGCGGGCa -3'
miRNA:   3'- -CGG--CGGUgCCUGCG--------CCUGc--GCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 67273 0.66 0.613706
Target:  5'- gGUCcCCACGGAUGUaGuCGCGgaCGGGCc -3'
miRNA:   3'- -CGGcGGUGCCUGCGcCuGCGC--GCCCG- -5'
5520 3' -64.1 NC_001798.1 + 76768 0.66 0.613706
Target:  5'- aGCgCGCCAaGGugGCccacGACGCcCGGGa -3'
miRNA:   3'- -CG-GCGGUgCCugCGc---CUGCGcGCCCg -5'
5520 3' -64.1 NC_001798.1 + 89679 0.66 0.613706
Target:  5'- cGCUG-CGCGGGCcCGGAgGCGUaguaGGCg -3'
miRNA:   3'- -CGGCgGUGCCUGcGCCUgCGCGc---CCG- -5'
5520 3' -64.1 NC_001798.1 + 25075 0.66 0.613706
Target:  5'- cCCGCCcCGGcca-GGGCGCcGCcGGGCg -3'
miRNA:   3'- cGGCGGuGCCugcgCCUGCG-CG-CCCG- -5'
5520 3' -64.1 NC_001798.1 + 67617 0.66 0.613706
Target:  5'- -gCGCUcCGGcgaGgGCGGAUGCGgcaGGGCg -3'
miRNA:   3'- cgGCGGuGCC---UgCGCCUGCGCg--CCCG- -5'
5520 3' -64.1 NC_001798.1 + 653 0.66 0.613706
Target:  5'- cCCcCCGCGGGCGCGGgagACGUGCc-GCc -3'
miRNA:   3'- cGGcGGUGCCUGCGCC---UGCGCGccCG- -5'
5520 3' -64.1 NC_001798.1 + 90995 0.66 0.612753
Target:  5'- cGCC-CCACaGGCGCaagcGACGCGgccagaagcccucCGGGCc -3'
miRNA:   3'- -CGGcGGUGcCUGCGc---CUGCGC-------------GCCCG- -5'
5520 3' -64.1 NC_001798.1 + 126260 0.66 0.604182
Target:  5'- aGCCGCC--GGGCGUccGGACGCccaaGCGGc- -3'
miRNA:   3'- -CGGCGGugCCUGCG--CCUGCG----CGCCcg -5'
5520 3' -64.1 NC_001798.1 + 2949 0.66 0.604182
Target:  5'- aGCCagGCgCGCaGGCG-GGGCGCGUcGGCg -3'
miRNA:   3'- -CGG--CG-GUGcCUGCgCCUGCGCGcCCG- -5'
5520 3' -64.1 NC_001798.1 + 32006 0.66 0.604182
Target:  5'- cGCCggGCCcCGGACuCGGACu--CGGGCg -3'
miRNA:   3'- -CGG--CGGuGCCUGcGCCUGcgcGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 82163 0.66 0.604182
Target:  5'- aGCCGaCCACGcGGcCGCGGuuuccgcCGCaGCGGcgGCa -3'
miRNA:   3'- -CGGC-GGUGC-CU-GCGCCu------GCG-CGCC--CG- -5'
5520 3' -64.1 NC_001798.1 + 4622 0.66 0.604182
Target:  5'- cGCCGUCGCgcuccgggggGGGCGaCGGGauCGUGCGaacGGCc -3'
miRNA:   3'- -CGGCGGUG----------CCUGC-GCCU--GCGCGC---CCG- -5'
5520 3' -64.1 NC_001798.1 + 17119 0.66 0.604182
Target:  5'- gGCCGCC-CGcGA-GCGGuagUGCGCGgugaGGCg -3'
miRNA:   3'- -CGGCGGuGC-CUgCGCCu--GCGCGC----CCG- -5'
5520 3' -64.1 NC_001798.1 + 31764 0.66 0.604182
Target:  5'- gGCCGg-GCaGGCGCGaccgacGCGCGCGGGUc -3'
miRNA:   3'- -CGGCggUGcCUGCGCc-----UGCGCGCCCG- -5'
5520 3' -64.1 NC_001798.1 + 77789 0.66 0.604182
Target:  5'- cGCCGCCuGCaGGCGCuGGCGgGCacgcacGGCu -3'
miRNA:   3'- -CGGCGG-UGcCUGCGcCUGCgCGc-----CCG- -5'
5520 3' -64.1 NC_001798.1 + 109974 0.66 0.604182
Target:  5'- -aC-CCGCGG-CGUGGccuccguucucACGCGCuGGGCg -3'
miRNA:   3'- cgGcGGUGCCuGCGCC-----------UGCGCG-CCCG- -5'
5520 3' -64.1 NC_001798.1 + 138535 0.66 0.601329
Target:  5'- aGCCGCUgaACGGGCgaaucgaagaccagGCGGuCGCcgguccacagggGgGGGCa -3'
miRNA:   3'- -CGGCGG--UGCCUG--------------CGCCuGCG------------CgCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.