Results 1 - 20 of 477 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5520 | 3' | -64.1 | NC_001798.1 | + | 25607 | 0.65 | 0.622287 |
Target: 5'- -gCGCCGgGGGCGggcccccccCGGagugguccgccgaGCGCGgCGGGCu -3' miRNA: 3'- cgGCGGUgCCUGC---------GCC-------------UGCGC-GCCCG- -5' |
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5520 | 3' | -64.1 | NC_001798.1 | + | 15430 | 0.65 | 0.620379 |
Target: 5'- gGuuGUUugGGGCcccggagucgugggGCGGGggguCGCGUGGGUa -3' miRNA: 3'- -CggCGGugCCUG--------------CGCCU----GCGCGCCCG- -5' |
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5520 | 3' | -64.1 | NC_001798.1 | + | 4124 | 0.66 | 0.613706 |
Target: 5'- gGCUcgGCCG-GGGCGCcgcccccgGGGCccuCGCGGGCa -3' miRNA: 3'- -CGG--CGGUgCCUGCG--------CCUGc--GCGCCCG- -5' |
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5520 | 3' | -64.1 | NC_001798.1 | + | 67273 | 0.66 | 0.613706 |
Target: 5'- gGUCcCCACGGAUGUaGuCGCGgaCGGGCc -3' miRNA: 3'- -CGGcGGUGCCUGCGcCuGCGC--GCCCG- -5' |
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5520 | 3' | -64.1 | NC_001798.1 | + | 76768 | 0.66 | 0.613706 |
Target: 5'- aGCgCGCCAaGGugGCccacGACGCcCGGGa -3' miRNA: 3'- -CG-GCGGUgCCugCGc---CUGCGcGCCCg -5' |
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5520 | 3' | -64.1 | NC_001798.1 | + | 89679 | 0.66 | 0.613706 |
Target: 5'- cGCUG-CGCGGGCcCGGAgGCGUaguaGGCg -3' miRNA: 3'- -CGGCgGUGCCUGcGCCUgCGCGc---CCG- -5' |
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5520 | 3' | -64.1 | NC_001798.1 | + | 25075 | 0.66 | 0.613706 |
Target: 5'- cCCGCCcCGGcca-GGGCGCcGCcGGGCg -3' miRNA: 3'- cGGCGGuGCCugcgCCUGCG-CG-CCCG- -5' |
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5520 | 3' | -64.1 | NC_001798.1 | + | 67617 | 0.66 | 0.613706 |
Target: 5'- -gCGCUcCGGcgaGgGCGGAUGCGgcaGGGCg -3' miRNA: 3'- cgGCGGuGCC---UgCGCCUGCGCg--CCCG- -5' |
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5520 | 3' | -64.1 | NC_001798.1 | + | 653 | 0.66 | 0.613706 |
Target: 5'- cCCcCCGCGGGCGCGGgagACGUGCc-GCc -3' miRNA: 3'- cGGcGGUGCCUGCGCC---UGCGCGccCG- -5' |
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5520 | 3' | -64.1 | NC_001798.1 | + | 90995 | 0.66 | 0.612753 |
Target: 5'- cGCC-CCACaGGCGCaagcGACGCGgccagaagcccucCGGGCc -3' miRNA: 3'- -CGGcGGUGcCUGCGc---CUGCGC-------------GCCCG- -5' |
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5520 | 3' | -64.1 | NC_001798.1 | + | 126260 | 0.66 | 0.604182 |
Target: 5'- aGCCGCC--GGGCGUccGGACGCccaaGCGGc- -3' miRNA: 3'- -CGGCGGugCCUGCG--CCUGCG----CGCCcg -5' |
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5520 | 3' | -64.1 | NC_001798.1 | + | 2949 | 0.66 | 0.604182 |
Target: 5'- aGCCagGCgCGCaGGCG-GGGCGCGUcGGCg -3' miRNA: 3'- -CGG--CG-GUGcCUGCgCCUGCGCGcCCG- -5' |
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5520 | 3' | -64.1 | NC_001798.1 | + | 32006 | 0.66 | 0.604182 |
Target: 5'- cGCCggGCCcCGGACuCGGACu--CGGGCg -3' miRNA: 3'- -CGG--CGGuGCCUGcGCCUGcgcGCCCG- -5' |
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5520 | 3' | -64.1 | NC_001798.1 | + | 82163 | 0.66 | 0.604182 |
Target: 5'- aGCCGaCCACGcGGcCGCGGuuuccgcCGCaGCGGcgGCa -3' miRNA: 3'- -CGGC-GGUGC-CU-GCGCCu------GCG-CGCC--CG- -5' |
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5520 | 3' | -64.1 | NC_001798.1 | + | 4622 | 0.66 | 0.604182 |
Target: 5'- cGCCGUCGCgcuccgggggGGGCGaCGGGauCGUGCGaacGGCc -3' miRNA: 3'- -CGGCGGUG----------CCUGC-GCCU--GCGCGC---CCG- -5' |
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5520 | 3' | -64.1 | NC_001798.1 | + | 17119 | 0.66 | 0.604182 |
Target: 5'- gGCCGCC-CGcGA-GCGGuagUGCGCGgugaGGCg -3' miRNA: 3'- -CGGCGGuGC-CUgCGCCu--GCGCGC----CCG- -5' |
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5520 | 3' | -64.1 | NC_001798.1 | + | 31764 | 0.66 | 0.604182 |
Target: 5'- gGCCGg-GCaGGCGCGaccgacGCGCGCGGGUc -3' miRNA: 3'- -CGGCggUGcCUGCGCc-----UGCGCGCCCG- -5' |
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5520 | 3' | -64.1 | NC_001798.1 | + | 77789 | 0.66 | 0.604182 |
Target: 5'- cGCCGCCuGCaGGCGCuGGCGgGCacgcacGGCu -3' miRNA: 3'- -CGGCGG-UGcCUGCGcCUGCgCGc-----CCG- -5' |
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5520 | 3' | -64.1 | NC_001798.1 | + | 109974 | 0.66 | 0.604182 |
Target: 5'- -aC-CCGCGG-CGUGGccuccguucucACGCGCuGGGCg -3' miRNA: 3'- cgGcGGUGCCuGCGCC-----------UGCGCG-CCCG- -5' |
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5520 | 3' | -64.1 | NC_001798.1 | + | 138535 | 0.66 | 0.601329 |
Target: 5'- aGCCGCUgaACGGGCgaaucgaagaccagGCGGuCGCcgguccacagggGgGGGCa -3' miRNA: 3'- -CGGCGG--UGCCUG--------------CGCCuGCG------------CgCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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