miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5534 3' -51 NC_001806.1 + 105687 0.67 0.983441
Target:  5'- cGGGuGAAGGcccaGGG-CUcGCAGCCAAcgucGGGg -3'
miRNA:   3'- -CCCuCUUUC----CCCaGA-CGUUGGUU----UCC- -5'
5534 3' -51 NC_001806.1 + 26114 0.68 0.98141
Target:  5'- gGGGAGGAgcGGGGGga-GgAGCgGGGGGa -3'
miRNA:   3'- -CCCUCUU--UCCCCagaCgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 25970 0.68 0.98141
Target:  5'- gGGGAGGAgcGGGGGga-GgAGCgGGGGGa -3'
miRNA:   3'- -CCCUCUU--UCCCCagaCgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 26006 0.68 0.98141
Target:  5'- gGGGAGGAgcGGGGGga-GgAGCgGGGGGa -3'
miRNA:   3'- -CCCUCUU--UCCCCagaCgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 26042 0.68 0.98141
Target:  5'- gGGGAGGAgcGGGGGga-GgAGCgGGGGGa -3'
miRNA:   3'- -CCCUCUU--UCCCCagaCgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 26078 0.68 0.98141
Target:  5'- gGGGAGGAgcGGGGGga-GgAGCgGGGGGa -3'
miRNA:   3'- -CCCUCUU--UCCCCagaCgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 31914 0.68 0.980547
Target:  5'- aGGGcGggGGGGGUUaacuacacauaggGCAA-CAAAGGa -3'
miRNA:   3'- -CCCuCuuUCCCCAGa------------CGUUgGUUUCC- -5'
5534 3' -51 NC_001806.1 + 95296 0.68 0.979198
Target:  5'- uGGGGGcgGGGGGcgCgGCGGacgcgcCCAAGGGc -3'
miRNA:   3'- -CCCUCuuUCCCCa-GaCGUU------GGUUUCC- -5'
5534 3' -51 NC_001806.1 + 128899 0.68 0.979198
Target:  5'- cGGGAGAuccucuGGGGGcCggGCGucCCAuuGGg -3'
miRNA:   3'- -CCCUCUu-----UCCCCaGa-CGUu-GGUuuCC- -5'
5534 3' -51 NC_001806.1 + 149882 0.68 0.979198
Target:  5'- cGGAGGGucccuGGGGGUC-GCAACguAGGcGg -3'
miRNA:   3'- cCCUCUU-----UCCCCAGaCGUUGguUUC-C- -5'
5534 3' -51 NC_001806.1 + 28863 0.68 0.978966
Target:  5'- gGGGGGAGAGGGGgaacUCgugGguGCUGAuugacgcGGGa -3'
miRNA:   3'- -CCCUCUUUCCCC----AGa--CguUGGUU-------UCC- -5'
5534 3' -51 NC_001806.1 + 4418 0.68 0.976796
Target:  5'- cGGAGAGGGGGGgugGCccGGgCGGGGGc -3'
miRNA:   3'- cCCUCUUUCCCCagaCG--UUgGUUUCC- -5'
5534 3' -51 NC_001806.1 + 34362 0.68 0.976796
Target:  5'- cGGGGGAccGGGG-CUGgGuauCCcGAGGu -3'
miRNA:   3'- -CCCUCUuuCCCCaGACgUu--GGuUUCC- -5'
5534 3' -51 NC_001806.1 + 43714 0.68 0.974197
Target:  5'- cGGGGGAAcccggucggGGGGGaUUgggGUGACCGAGGc -3'
miRNA:   3'- -CCCUCUU---------UCCCC-AGa--CGUUGGUUUCc -5'
5534 3' -51 NC_001806.1 + 34996 0.68 0.971393
Target:  5'- gGGGAGAGGGGGGgagagGgGAgaGGGGGg -3'
miRNA:   3'- -CCCUCUUUCCCCaga--CgUUggUUUCC- -5'
5534 3' -51 NC_001806.1 + 34895 0.68 0.971393
Target:  5'- gGGGAGAGGGGGGgagagGgGAgaGGGGGg -3'
miRNA:   3'- -CCCUCUUUCCCCaga--CgUUggUUUCC- -5'
5534 3' -51 NC_001806.1 + 32826 0.68 0.971393
Target:  5'- gGGGAGGAAGGGaGggaggagGguACUggGGGu -3'
miRNA:   3'- -CCCUCUUUCCC-Caga----CguUGGuuUCC- -5'
5534 3' -51 NC_001806.1 + 34962 0.68 0.971393
Target:  5'- gGGGAGAGGGGGGgagagGgGAgaGGGGGg -3'
miRNA:   3'- -CCCUCUUUCCCCaga--CgUUggUUUCC- -5'
5534 3' -51 NC_001806.1 + 146173 0.69 0.968376
Target:  5'- cGGGGAucGGuGGUCagGCAGCCc-GGGc -3'
miRNA:   3'- cCCUCUuuCC-CCAGa-CGUUGGuuUCC- -5'
5534 3' -51 NC_001806.1 + 103584 0.69 0.967428
Target:  5'- cGGGGGGAGGGGGaaggaacgaaacacUCUcauucggagGCGGCUcgGGGu -3'
miRNA:   3'- -CCCUCUUUCCCC--------------AGA---------CGUUGGuuUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.