miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5535 3' -58.5 NC_001806.1 + 94207 0.66 0.83371
Target:  5'- gCCCagGCcgGGGCcuuucUCAC-CCCGCUGUCGg -3'
miRNA:   3'- -GGG--CGa-CCCGc----AGUGcGGGUGAUAGU- -5'
5535 3' -58.5 NC_001806.1 + 93015 0.66 0.83371
Target:  5'- aCCUGCUGcggcccgucauGGCGgCGCGCcCCAUgGUCGu -3'
miRNA:   3'- -GGGCGAC-----------CCGCaGUGCG-GGUGaUAGU- -5'
5535 3' -58.5 NC_001806.1 + 64939 0.66 0.825501
Target:  5'- aCCGCUGagggaccaccGGCGUCGgCGCCCGg----- -3'
miRNA:   3'- gGGCGAC----------CCGCAGU-GCGGGUgauagu -5'
5535 3' -58.5 NC_001806.1 + 82551 0.66 0.825501
Target:  5'- gCCCGCgaugGGaGCGUgCGUGCCCGCg---- -3'
miRNA:   3'- -GGGCGa---CC-CGCA-GUGCGGGUGauagu -5'
5535 3' -58.5 NC_001806.1 + 22684 0.66 0.825501
Target:  5'- gCCGCccugGGGCGgcuguccgcCGCGCCCGCc---- -3'
miRNA:   3'- gGGCGa---CCCGCa--------GUGCGGGUGauagu -5'
5535 3' -58.5 NC_001806.1 + 55184 0.66 0.808585
Target:  5'- gUCGC-GGGCGUCAccuCGCCgAUaAUCAg -3'
miRNA:   3'- gGGCGaCCCGCAGU---GCGGgUGaUAGU- -5'
5535 3' -58.5 NC_001806.1 + 135652 0.66 0.808585
Target:  5'- uCCUGCaauUGGGuCGcCAgGCCCGCguugGUCu -3'
miRNA:   3'- -GGGCG---ACCC-GCaGUgCGGGUGa---UAGu -5'
5535 3' -58.5 NC_001806.1 + 88950 0.66 0.799893
Target:  5'- cCCCGCcgGGGCGUggucCACGCcgccCCACa---- -3'
miRNA:   3'- -GGGCGa-CCCGCA----GUGCG----GGUGauagu -5'
5535 3' -58.5 NC_001806.1 + 52482 0.66 0.799893
Target:  5'- cUCCGCaacgGGGCGcCGuCGCuCCACUAc-- -3'
miRNA:   3'- -GGGCGa---CCCGCaGU-GCG-GGUGAUagu -5'
5535 3' -58.5 NC_001806.1 + 22200 0.67 0.794608
Target:  5'- gCCCgaGCUGGGCGacgccgcgcagcagUACGCCCug-AUCAc -3'
miRNA:   3'- -GGG--CGACCCGCa-------------GUGCGGGugaUAGU- -5'
5535 3' -58.5 NC_001806.1 + 108540 0.67 0.791056
Target:  5'- gCCCGCgUGcGGCugGcCGCGCCCGCcgcuccgcgGUCAa -3'
miRNA:   3'- -GGGCG-AC-CCG--CaGUGCGGGUGa--------UAGU- -5'
5535 3' -58.5 NC_001806.1 + 144350 0.67 0.787483
Target:  5'- cCCCGCgccgguccauuaaGGGCGcgCGUGCCCGCgagaUAUCAa -3'
miRNA:   3'- -GGGCGa------------CCCGCa-GUGCGGGUG----AUAGU- -5'
5535 3' -58.5 NC_001806.1 + 136035 0.67 0.782082
Target:  5'- aCCCGCgcggcaccGGCcacccCGCGCUCGCUGUCGc -3'
miRNA:   3'- -GGGCGac------CCGca---GUGCGGGUGAUAGU- -5'
5535 3' -58.5 NC_001806.1 + 48045 0.67 0.782082
Target:  5'- uCCCGCUGGuGCGcagCGCGgCUACg---- -3'
miRNA:   3'- -GGGCGACC-CGCa--GUGCgGGUGauagu -5'
5535 3' -58.5 NC_001806.1 + 135540 0.67 0.763755
Target:  5'- cCCCGCaGGGCGgcugcCGCaUCCACcgGUCAc -3'
miRNA:   3'- -GGGCGaCCCGCa----GUGcGGGUGa-UAGU- -5'
5535 3' -58.5 NC_001806.1 + 22772 0.67 0.763755
Target:  5'- -aCGCcGGGCGcCGCGCCCAg----- -3'
miRNA:   3'- ggGCGaCCCGCaGUGCGGGUgauagu -5'
5535 3' -58.5 NC_001806.1 + 4037 0.67 0.763755
Target:  5'- aCUGCUGcgcGGCGUCgcccagcucggGCGCCCACa---- -3'
miRNA:   3'- gGGCGAC---CCGCAG-----------UGCGGGUGauagu -5'
5535 3' -58.5 NC_001806.1 + 119856 0.67 0.763755
Target:  5'- cUCCGUggcgugGGGCGggcgaCGCGCCCgcccuccgcuGCUGUCc -3'
miRNA:   3'- -GGGCGa-----CCCGCa----GUGCGGG----------UGAUAGu -5'
5535 3' -58.5 NC_001806.1 + 3469 0.67 0.763755
Target:  5'- gCCgGcCUGGGCGcgGCGCCCGgcGUCGu -3'
miRNA:   3'- -GGgC-GACCCGCagUGCGGGUgaUAGU- -5'
5535 3' -58.5 NC_001806.1 + 1330 0.67 0.75442
Target:  5'- uCCCGCcgcggGGGCGUgGCcaaGCCCGCc---- -3'
miRNA:   3'- -GGGCGa----CCCGCAgUG---CGGGUGauagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.