miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5537 3' -58.3 NC_001806.1 + 84413 0.66 0.835911
Target:  5'- cGAGGCugaCCCCGAGAcgcagcccgGGGaCGGG-GGCc -3'
miRNA:   3'- uCUCUG---GGGGCUCUa--------CCC-GUCCaUCG- -5'
5537 3' -58.3 NC_001806.1 + 148138 0.66 0.827691
Target:  5'- uGAGACgCCCCGcccgucacGggGGGCGcGGcGGCg -3'
miRNA:   3'- uCUCUG-GGGGCu-------CuaCCCGU-CCaUCG- -5'
5537 3' -58.3 NC_001806.1 + 45307 0.66 0.827691
Target:  5'- cGGGGAgCCgCCCGGcGAggaGGGCGGGc-GCg -3'
miRNA:   3'- -UCUCU-GG-GGGCU-CUa--CCCGUCCauCG- -5'
5537 3' -58.3 NC_001806.1 + 72852 0.66 0.819299
Target:  5'- cGAGACaugcggguCCUgGAGAUGGGCGucgucccgguuGGUcGGCa -3'
miRNA:   3'- uCUCUG--------GGGgCUCUACCCGU-----------CCA-UCG- -5'
5537 3' -58.3 NC_001806.1 + 130499 0.66 0.819299
Target:  5'- -cAGGCCgCCGAGAcGGaGgAGGUGGg -3'
miRNA:   3'- ucUCUGGgGGCUCUaCC-CgUCCAUCg -5'
5537 3' -58.3 NC_001806.1 + 65302 0.66 0.81845
Target:  5'- gGGGGGCCCCCaagggccucggugGGGAcgucggccgucUGGGUAccGGUAGa -3'
miRNA:   3'- -UCUCUGGGGG-------------CUCU-----------ACCCGU--CCAUCg -5'
5537 3' -58.3 NC_001806.1 + 48890 0.66 0.815895
Target:  5'- cGGGACCguuucccauuuggCCGGGGgcugGGGCggcGGGUAGCc -3'
miRNA:   3'- uCUCUGGg------------GGCUCUa---CCCG---UCCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 18569 0.66 0.809877
Target:  5'- gAGGGACCCgCGGGGUucugGGGUuuccagcguaacgGGGgagggGGCa -3'
miRNA:   3'- -UCUCUGGGgGCUCUA----CCCG-------------UCCa----UCG- -5'
5537 3' -58.3 NC_001806.1 + 123189 0.66 0.802026
Target:  5'- cAGAGcacCCCCCGGGucgcccGCAgGGUGGCg -3'
miRNA:   3'- -UCUCu--GGGGGCUCuacc--CGU-CCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 20552 0.66 0.802026
Target:  5'- uGAGAUgCCau-GcgGGGCGGGgcGCg -3'
miRNA:   3'- uCUCUGgGGgcuCuaCCCGUCCauCG- -5'
5537 3' -58.3 NC_001806.1 + 13521 0.66 0.802026
Target:  5'- gGGGGGCCUCCGAcGGUGcGUuuAGG-AGCa -3'
miRNA:   3'- -UCUCUGGGGGCU-CUACcCG--UCCaUCG- -5'
5537 3' -58.3 NC_001806.1 + 147660 0.67 0.787775
Target:  5'- cGGGGCgggcggccggcuccgCCCCGGGGgccgGGGCGcGGgGGCg -3'
miRNA:   3'- uCUCUG---------------GGGGCUCUa---CCCGU-CCaUCG- -5'
5537 3' -58.3 NC_001806.1 + 72324 0.67 0.784157
Target:  5'- --cGAUCgCCCGGacguacGGUGGGCGGG-AGCc -3'
miRNA:   3'- ucuCUGG-GGGCU------CUACCCGUCCaUCG- -5'
5537 3' -58.3 NC_001806.1 + 113746 0.67 0.784157
Target:  5'- --uGACCggCCCgGAGcUGGGCGGGcagGGCa -3'
miRNA:   3'- ucuCUGG--GGG-CUCuACCCGUCCa--UCG- -5'
5537 3' -58.3 NC_001806.1 + 20659 0.67 0.784157
Target:  5'- -cGGGCCCCCGGcgugccggcGucgGGGCGGGgucguGCa -3'
miRNA:   3'- ucUCUGGGGGCU---------Cua-CCCGUCCau---CG- -5'
5537 3' -58.3 NC_001806.1 + 111197 0.67 0.781429
Target:  5'- -cGGGCCCUgGGGAUagccugcgcggccgGGGCcucgauguGGGUGGCg -3'
miRNA:   3'- ucUCUGGGGgCUCUA--------------CCCG--------UCCAUCG- -5'
5537 3' -58.3 NC_001806.1 + 93275 0.67 0.775019
Target:  5'- cGGGGcauuAUCUCCGAGGgcgGGGCGGccgucgccaGUAGCg -3'
miRNA:   3'- -UCUC----UGGGGGCUCUa--CCCGUC---------CAUCG- -5'
5537 3' -58.3 NC_001806.1 + 146922 0.67 0.775019
Target:  5'- cGAuGuuCCCCGucuccauguccaGGAUGGGCAGGcAGUc -3'
miRNA:   3'- uCU-CugGGGGC------------UCUACCCGUCCaUCG- -5'
5537 3' -58.3 NC_001806.1 + 117059 0.67 0.775019
Target:  5'- -uAGACCCaCGGGG-GGGUGGGggugGGCa -3'
miRNA:   3'- ucUCUGGGgGCUCUaCCCGUCCa---UCG- -5'
5537 3' -58.3 NC_001806.1 + 82490 0.67 0.774098
Target:  5'- cGAGACCCUCGAa---GGCgucaccuGGGUGGCc -3'
miRNA:   3'- uCUCUGGGGGCUcuacCCG-------UCCAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.