miRNA display CGI


Results 61 - 80 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5537 5' -66 NC_001806.1 + 73985 0.78 0.090613
Target:  5'- cCCGCCCcgGCcGGGGCGGCCCCGcaGggGg -3'
miRNA:   3'- -GGCGGG--CGcCCCUGCCGGGGC--CuuCa -5'
5537 5' -66 NC_001806.1 + 73931 0.66 0.524249
Target:  5'- cUCGCUCGCGGGGucgacGCGGUCucacagcacgCCGGGc-- -3'
miRNA:   3'- -GGCGGGCGCCCC-----UGCCGG----------GGCCUuca -5'
5537 5' -66 NC_001806.1 + 72524 0.7 0.303462
Target:  5'- -aGCCCuGCGucGGcGugGGCCCCcGGGAGg -3'
miRNA:   3'- ggCGGG-CGC--CC-CugCCGGGG-CCUUCa -5'
5537 5' -66 NC_001806.1 + 72491 0.71 0.243406
Target:  5'- aCCcCCUGCGGGGcgagaucGCGGgCCUGGggGa -3'
miRNA:   3'- -GGcGGGCGCCCC-------UGCCgGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 70153 0.71 0.249436
Target:  5'- aCCGgCCGCccGGGGCGGCCUCGGc--- -3'
miRNA:   3'- -GGCgGGCGc-CCCUGCCGGGGCCuuca -5'
5537 5' -66 NC_001806.1 + 68572 0.66 0.479647
Target:  5'- gCCgGCCUGCGcaccGcGGCGGCCCUGGGgccGGUc -3'
miRNA:   3'- -GG-CGGGCGCc---C-CUGCCGGGGCCU---UCA- -5'
5537 5' -66 NC_001806.1 + 67982 0.75 0.143082
Target:  5'- aCGCCUGCGGGGguccuggAgGGCCgCGGggGa -3'
miRNA:   3'- gGCGGGCGCCCC-------UgCCGGgGCCuuCa -5'
5537 5' -66 NC_001806.1 + 66812 0.7 0.303462
Target:  5'- aCgGCCgaGCGGGGcCGGCCCgGGuGGc -3'
miRNA:   3'- -GgCGGg-CGCCCCuGCCGGGgCCuUCa -5'
5537 5' -66 NC_001806.1 + 65434 0.66 0.515193
Target:  5'- aCCGCaacgaagggaGCGGGGgaugccGCGGcCCCCGGGu-- -3'
miRNA:   3'- -GGCGgg--------CGCCCC------UGCC-GGGGCCUuca -5'
5537 5' -66 NC_001806.1 + 60001 0.69 0.3514
Target:  5'- -gGaCCCG-GGGGACGGCCggguCCGGAGc- -3'
miRNA:   3'- ggC-GGGCgCCCCUGCCGG----GGCCUUca -5'
5537 5' -66 NC_001806.1 + 57617 0.67 0.427072
Target:  5'- cCCGcCCCGUcaGGGGAauccaaaaccauaCGGgguuugggggcccCCCCGGAAGg -3'
miRNA:   3'- -GGC-GGGCG--CCCCU-------------GCC-------------GGGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 56842 0.71 0.266507
Target:  5'- aCCG-CCGCGGccaGGGCGGCCgCGGcGGg -3'
miRNA:   3'- -GGCgGGCGCC---CCUGCCGGgGCCuUCa -5'
5537 5' -66 NC_001806.1 + 55778 0.67 0.445344
Target:  5'- aCCGCucCCGCGGugaucGugGGCCCggUGGAGGc -3'
miRNA:   3'- -GGCG--GGCGCCc----CugCCGGG--GCCUUCa -5'
5537 5' -66 NC_001806.1 + 55526 0.72 0.212629
Target:  5'- -gGCCCGgGGGGuuuagugggGCGGCCCgacuuggCGGggGUg -3'
miRNA:   3'- ggCGGGCgCCCC---------UGCCGGG-------GCCuuCA- -5'
5537 5' -66 NC_001806.1 + 54866 0.73 0.203139
Target:  5'- -gGUCCGCGGGGggaccuggccgccGCaGCCUCGGAGGUc -3'
miRNA:   3'- ggCGGGCGCCCC-------------UGcCGGGGCCUUCA- -5'
5537 5' -66 NC_001806.1 + 54714 0.66 0.506202
Target:  5'- aCGCCCuCGGGGACG-CagCCGGccGUg -3'
miRNA:   3'- gGCGGGcGCCCCUGCcGg-GGCCuuCA- -5'
5537 5' -66 NC_001806.1 + 53884 0.68 0.388799
Target:  5'- -aGCCgCGCGGGGAUcagGGUCgCCGGGGc- -3'
miRNA:   3'- ggCGG-GCGCCCCUG---CCGG-GGCCUUca -5'
5537 5' -66 NC_001806.1 + 52933 0.72 0.228091
Target:  5'- uCgGCCacggguGUGGGGACccGCCCCGGAGGg -3'
miRNA:   3'- -GgCGGg-----CGCCCCUGc-CGGGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 52877 0.67 0.436984
Target:  5'- aCCGCCgGCGGcGACGuGCCCCu----- -3'
miRNA:   3'- -GGCGGgCGCCcCUGC-CGGGGccuuca -5'
5537 5' -66 NC_001806.1 + 52552 0.68 0.369029
Target:  5'- -gGUCCGCGGGGccucccccggacgacAUGGCcagcggCCCGGggGg -3'
miRNA:   3'- ggCGGGCGCCCC---------------UGCCG------GGGCCuuCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.