Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5538 | 5' | -54.2 | NC_001806.1 | + | 93939 | 0.66 | 0.946624 |
Target: 5'- aCGCCggGUagcguacggaCCGcCUcGGUCCACCg -3' miRNA: 3'- aGCGGuaCAaag-------GGCaGA-CCAGGUGG- -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 90254 | 0.66 | 0.947493 |
Target: 5'- gUCGCCGUGgcgCCC--CUGGUCguggGCCu -3' miRNA: 3'- -AGCGGUACaaaGGGcaGACCAGg---UGG- -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 135511 | 0.66 | 0.951696 |
Target: 5'- aUGUCAUaGUcggCCCGgagCaGGUCCGCCc -3' miRNA: 3'- aGCGGUA-CAaa-GGGCa--GaCCAGGUGG- -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 148072 | 0.66 | 0.951696 |
Target: 5'- cUGCCGUGUggCCCGa-UGGg-CGCCg -3' miRNA: 3'- aGCGGUACAaaGGGCagACCagGUGG- -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 96975 | 0.66 | 0.955669 |
Target: 5'- aCGCCAaGggggUCUGUC-GGUCCACg -3' miRNA: 3'- aGCGGUaCaaa-GGGCAGaCCAGGUGg -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 129611 | 0.66 | 0.955669 |
Target: 5'- gCGCCGgugccUGUUUCUcccgCGUCUGGggaccgagcUCCugCa -3' miRNA: 3'- aGCGGU-----ACAAAGG----GCAGACC---------AGGugG- -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 146916 | 0.66 | 0.959413 |
Target: 5'- aCGCCccgAUGUUcCCCGUCUccauGUCCAg- -3' miRNA: 3'- aGCGG---UACAAaGGGCAGAc---CAGGUgg -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 28237 | 0.66 | 0.962933 |
Target: 5'- gCGCCAUGUUgggggaccCCCGacccuuacaCUGGaaccggCCGCCa -3' miRNA: 3'- aGCGGUACAAa-------GGGCa--------GACCa-----GGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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