Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5538 | 5' | -54.2 | NC_001806.1 | + | 2680 | 0.69 | 0.87123 |
Target: 5'- cCGCCGUGUggcugggcCCCGg--GGgcugCCGCCg -3' miRNA: 3'- aGCGGUACAaa------GGGCagaCCa---GGUGG- -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 126661 | 0.69 | 0.869009 |
Target: 5'- aCGCCAcaccaucucccccgUG--UCCUGgagcuccggggaUCUGGUCCGCCg -3' miRNA: 3'- aGCGGU--------------ACaaAGGGC------------AGACCAGGUGG- -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 22188 | 0.69 | 0.863752 |
Target: 5'- -gGCCGUGUgggcgCCCGagCUGGgcgaCGCCg -3' miRNA: 3'- agCGGUACAaa---GGGCa-GACCag--GUGG- -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 83383 | 0.71 | 0.769179 |
Target: 5'- gCGCUGgaccggcCCUGUCUGGUCUGCCg -3' miRNA: 3'- aGCGGUacaaa--GGGCAGACCAGGUGG- -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 7807 | 0.72 | 0.740318 |
Target: 5'- -gGCCAUGUUgggccgCCaCGcgcggCUGGUCCACa -3' miRNA: 3'- agCGGUACAAa-----GG-GCa----GACCAGGUGg -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 125732 | 0.72 | 0.730495 |
Target: 5'- -gGCCAUcggUCCCcUCUGGcCCGCCu -3' miRNA: 3'- agCGGUAcaaAGGGcAGACCaGGUGG- -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 84094 | 0.73 | 0.680278 |
Target: 5'- cUGCCGcGgaggCCCGUCgcgccacGGUCCGCCa -3' miRNA: 3'- aGCGGUaCaaa-GGGCAGa------CCAGGUGG- -5' |
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5538 | 5' | -54.2 | NC_001806.1 | + | 146879 | 1.13 | 0.002446 |
Target: 5'- gUCGCCAUGUUUCCCGUCUGGUCCACCa -3' miRNA: 3'- -AGCGGUACAAAGGGCAGACCAGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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