Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5539 | 3' | -65.2 | NC_001806.1 | + | 32943 | 0.66 | 0.491001 |
Target: 5'- -cCGGGCcguuguggGGcCCCGGGCCGgGGCc--- -3' miRNA: 3'- caGUCCG--------UC-GGGCCCGGCgCCGagac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 5773 | 0.66 | 0.491001 |
Target: 5'- --gGGGCggGGCCCGGGCCccgacuuccCGGUUCg- -3' miRNA: 3'- cagUCCG--UCGGGCCCGGc--------GCCGAGac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 49356 | 0.66 | 0.481941 |
Target: 5'- cGUCccGGCAGCgccCCGGGCCcgauGCGGCcCg- -3' miRNA: 3'- -CAGu-CCGUCG---GGCCCGG----CGCCGaGac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 94195 | 0.66 | 0.472963 |
Target: 5'- -cCGGGCcuggaGGCCCaGGCCGgGGC-CUu -3' miRNA: 3'- caGUCCG-----UCGGGcCCGGCgCCGaGAc -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 108152 | 0.66 | 0.46407 |
Target: 5'- -aCAcGCAGCCCGuGGCCGCaauugcgcccgGGuUUCUGg -3' miRNA: 3'- caGUcCGUCGGGC-CCGGCG-----------CC-GAGAC- -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 3608 | 0.66 | 0.46407 |
Target: 5'- -gCGGGCAccgcgcgcucGCCCGGuGCgGCGGCg--- -3' miRNA: 3'- caGUCCGU----------CGGGCC-CGgCGCCGagac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 31727 | 0.66 | 0.455265 |
Target: 5'- aGUgGGGguGCCauguuGGGCa--GGCUCUGg -3' miRNA: 3'- -CAgUCCguCGGg----CCCGgcgCCGAGAC- -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 150879 | 0.66 | 0.455265 |
Target: 5'- -gCGGGCcagGGCCCGGGCaCG-GGcCUCg- -3' miRNA: 3'- caGUCCG---UCGGGCCCG-GCgCC-GAGac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 147984 | 0.66 | 0.455265 |
Target: 5'- --gGGGCcagacGCCCcccgcGGcGCCGCGGCUCg- -3' miRNA: 3'- cagUCCGu----CGGG-----CC-CGGCGCCGAGac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 12819 | 0.66 | 0.454389 |
Target: 5'- uUCGGGguGgCCGGGggaugguaaggcgUCGCGGCgucCUGg -3' miRNA: 3'- cAGUCCguCgGGCCC-------------GGCGCCGa--GAC- -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 24001 | 0.66 | 0.446551 |
Target: 5'- -gCuGGCGGCCCuGGCCaacCGGCUgUGc -3' miRNA: 3'- caGuCCGUCGGGcCCGGc--GCCGAgAC- -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 20350 | 0.66 | 0.446551 |
Target: 5'- -gCGGGCGGCCCuuGGGCCGCccGC-Cg- -3' miRNA: 3'- caGUCCGUCGGG--CCCGGCGc-CGaGac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 384 | 0.67 | 0.43793 |
Target: 5'- -gCGGGgGGCCCGGGCUGCcacaGGUg--- -3' miRNA: 3'- caGUCCgUCGGGCCCGGCG----CCGagac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 38274 | 0.67 | 0.43793 |
Target: 5'- -aCGGGCGGaccgCCGGGCgaGCGGCgUCg- -3' miRNA: 3'- caGUCCGUCg---GGCCCGg-CGCCG-AGac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 148100 | 0.67 | 0.43793 |
Target: 5'- --gGGGCGcuGUCCGaGCCGCGGCcggCUGg -3' miRNA: 3'- cagUCCGU--CGGGCcCGGCGCCGa--GAC- -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 25911 | 0.67 | 0.43793 |
Target: 5'- ---cGGCGGUCCGGGCgGCGuGCg--- -3' miRNA: 3'- caguCCGUCGGGCCCGgCGC-CGagac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 26955 | 0.67 | 0.43793 |
Target: 5'- cUC-GGCcGCCCGccuggcgcGCCGCGGCUCg- -3' miRNA: 3'- cAGuCCGuCGGGCc-------CGGCGCCGAGac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 107028 | 0.67 | 0.43793 |
Target: 5'- -cCGGGUuggccGCCCgcgGGGCCGCgGGCUgUGc -3' miRNA: 3'- caGUCCGu----CGGG---CCCGGCG-CCGAgAC- -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 76589 | 0.67 | 0.412655 |
Target: 5'- -cCGGGCccAGCUCGaGGCCGaGGgUCUGg -3' miRNA: 3'- caGUCCG--UCGGGC-CCGGCgCCgAGAC- -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 5893 | 0.67 | 0.396314 |
Target: 5'- -gCGGGCGGCCCaaGGGCCGCccGCcUUGc -3' miRNA: 3'- caGUCCGUCGGG--CCCGGCGc-CGaGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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