miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5542 3' -54.3 NC_001806.1 + 84896 0.66 0.963468
Target:  5'- gGGcGUGGUGCGucGGGCcucCCGGa- -3'
miRNA:   3'- gCC-CACCACGCuuUCUGaaaGGCCcg -5'
5542 3' -54.3 NC_001806.1 + 1438 0.66 0.959984
Target:  5'- cCGGGcGGcgccgGCGGcAGGGCcc-CCGGGCc -3'
miRNA:   3'- -GCCCaCCa----CGCU-UUCUGaaaGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 95044 0.66 0.959984
Target:  5'- cCGcGGUGGccGUGGAAcuGGCgcugUUCGGGCg -3'
miRNA:   3'- -GC-CCACCa-CGCUUU--CUGaa--AGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 91376 0.66 0.959984
Target:  5'- -aGGUGGaccGCGAGGGACacguggugcCCGGGUu -3'
miRNA:   3'- gcCCACCa--CGCUUUCUGaaa------GGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 34009 0.66 0.959984
Target:  5'- gGGcGUGG-GCGggGGuGCUcgucgaucgaCCGGGCu -3'
miRNA:   3'- gCC-CACCaCGCuuUC-UGAaa--------GGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 2805 0.66 0.959984
Target:  5'- gCGGGcUGG-GCGggGG-CgggCuCGGGCc -3'
miRNA:   3'- -GCCC-ACCaCGCuuUCuGaaaG-GCCCG- -5'
5542 3' -54.3 NC_001806.1 + 4427 0.66 0.956278
Target:  5'- gGGGUGGcccggGCGggGGcgGCguccgcCCGGGg -3'
miRNA:   3'- gCCCACCa----CGCuuUC--UGaaa---GGCCCg -5'
5542 3' -54.3 NC_001806.1 + 77280 0.66 0.956278
Target:  5'- cCGGGgaccuggccccaUGGgcgGUGGAGGAg-UUCCGGGg -3'
miRNA:   3'- -GCCC------------ACCa--CGCUUUCUgaAAGGCCCg -5'
5542 3' -54.3 NC_001806.1 + 95301 0.66 0.956278
Target:  5'- gCGGGgGGcGCGgcGGACgcgCCcaaGGGCg -3'
miRNA:   3'- -GCCCaCCaCGCuuUCUGaaaGG---CCCG- -5'
5542 3' -54.3 NC_001806.1 + 151273 0.66 0.953946
Target:  5'- cCGGGcGGUGggggccggggcCGggGGGCggcggcggugggCCGGGCc -3'
miRNA:   3'- -GCCCaCCAC-----------GCuuUCUGaaa---------GGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 66831 0.66 0.948182
Target:  5'- cCGGGUGGccggugUGCGccgccuccuGGGGC---CCGGGCa -3'
miRNA:   3'- -GCCCACC------ACGCu--------UUCUGaaaGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 41828 0.66 0.948182
Target:  5'- gCGGGggcGG-GCGucAGGGCc--CCGGGCg -3'
miRNA:   3'- -GCCCa--CCaCGCu-UUCUGaaaGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 32623 0.67 0.943784
Target:  5'- aGGGUGGgaGgGggGGAaaagaaCGGGCu -3'
miRNA:   3'- gCCCACCa-CgCuuUCUgaaag-GCCCG- -5'
5542 3' -54.3 NC_001806.1 + 12658 0.67 0.943784
Target:  5'- aGGGcUGGUGCGA-GGACgg-CUGGuCg -3'
miRNA:   3'- gCCC-ACCACGCUuUCUGaaaGGCCcG- -5'
5542 3' -54.3 NC_001806.1 + 32176 0.67 0.943784
Target:  5'- gGGGcGGUGCuucuuAGAGACcg-CCGGGg -3'
miRNA:   3'- gCCCaCCACGc----UUUCUGaaaGGCCCg -5'
5542 3' -54.3 NC_001806.1 + 10388 0.67 0.93915
Target:  5'- uCGGGgGGgcgGgGGGAGGCgggagCCGGGg -3'
miRNA:   3'- -GCCCaCCa--CgCUUUCUGaaa--GGCCCg -5'
5542 3' -54.3 NC_001806.1 + 111544 0.67 0.93915
Target:  5'- aCGGGUGGccggGCGuuGGGguggaucuuagcCUccCCGGGCc -3'
miRNA:   3'- -GCCCACCa---CGCuuUCU------------GAaaGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 147781 0.67 0.93915
Target:  5'- gCGGGgggcccgGG-GCGggGGGCggagCCuGGCa -3'
miRNA:   3'- -GCCCa------CCaCGCuuUCUGaaa-GGcCCG- -5'
5542 3' -54.3 NC_001806.1 + 81641 0.67 0.93915
Target:  5'- uGGG-GGUGUcggucgGGAGGGCUgugUgGGGCg -3'
miRNA:   3'- gCCCaCCACG------CUUUCUGAaa-GgCCCG- -5'
5542 3' -54.3 NC_001806.1 + 25101 0.67 0.934278
Target:  5'- gCGGGaGGggGCGAGGGGCgggaggGGGCg -3'
miRNA:   3'- -GCCCaCCa-CGCUUUCUGaaagg-CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.