miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5543 5' -59.6 NC_001806.1 + 26518 0.66 0.732899
Target:  5'- -gCCgcCGCCCCCC-GCCggugggCC-CCCg -3'
miRNA:   3'- uaGGauGUGGGGGGaCGGaa----GGuGGG- -5'
5543 5' -59.6 NC_001806.1 + 30468 0.66 0.732899
Target:  5'- cUCCgGCGCCgCCCCgcucCCcUCCGCCg -3'
miRNA:   3'- uAGGaUGUGG-GGGGac--GGaAGGUGGg -5'
5543 5' -59.6 NC_001806.1 + 125374 0.66 0.732899
Target:  5'- uUCCgcugACaACCaccuuccguCCCCUGCCccccCCACCCc -3'
miRNA:   3'- uAGGa---UG-UGG---------GGGGACGGaa--GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 34679 0.66 0.732899
Target:  5'- -aCCgACACCUCCCgcGCacccCCGCCCa -3'
miRNA:   3'- uaGGaUGUGGGGGGa-CGgaa-GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 30664 0.66 0.731934
Target:  5'- -cCCgGgACCCCCCUgacguccucggcgGCCU-CCGCCUc -3'
miRNA:   3'- uaGGaUgUGGGGGGA-------------CGGAaGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 104844 0.66 0.723211
Target:  5'- cAUCCcauCGCCgCCCU-CCUgugCUACCCg -3'
miRNA:   3'- -UAGGau-GUGGgGGGAcGGAa--GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 120578 0.66 0.721264
Target:  5'- --gCUACGCCuaCCUCUGCCUgggguuuaaucgCCGCCUc -3'
miRNA:   3'- uagGAUGUGG--GGGGACGGAa-----------GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 135802 0.66 0.713448
Target:  5'- gGUCCUG-GCCCgcagaCCCgcgGCUguUUCCGCCCu -3'
miRNA:   3'- -UAGGAUgUGGG-----GGGa--CGG--AAGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 30134 0.66 0.713448
Target:  5'- cUCCccacAgGCCCCCCgcggcgcccaUGCCaggcUCCGCCCc -3'
miRNA:   3'- uAGGa---UgUGGGGGG----------ACGGa---AGGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 48621 0.66 0.713448
Target:  5'- -aCCcGCAUCCCCCgucuggGUUUUCCccuCCCg -3'
miRNA:   3'- uaGGaUGUGGGGGGa-----CGGAAGGu--GGG- -5'
5543 5' -59.6 NC_001806.1 + 74879 0.66 0.713448
Target:  5'- -cCCUGCggGCCUCCCUGCCggCgGgCUg -3'
miRNA:   3'- uaGGAUG--UGGGGGGACGGaaGgUgGG- -5'
5543 5' -59.6 NC_001806.1 + 137810 0.66 0.711486
Target:  5'- -aCC-ACACCCCCCaguacgcggcccGCCUgCgGCCCg -3'
miRNA:   3'- uaGGaUGUGGGGGGa-----------CGGAaGgUGGG- -5'
5543 5' -59.6 NC_001806.1 + 145984 0.67 0.703617
Target:  5'- -cCCUuuuggGCGCCCCguCCcGCCccgCCACCCc -3'
miRNA:   3'- uaGGA-----UGUGGGG--GGaCGGaa-GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 114199 0.67 0.703617
Target:  5'- -cCCcGCGCaCCCCCUGCac-CCGgCCa -3'
miRNA:   3'- uaGGaUGUG-GGGGGACGgaaGGUgGG- -5'
5543 5' -59.6 NC_001806.1 + 100629 0.67 0.703617
Target:  5'- uGUCCgGCgAUCCCggCCUGCCgccgCCGCUCg -3'
miRNA:   3'- -UAGGaUG-UGGGG--GGACGGaa--GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 127267 0.67 0.703617
Target:  5'- -aCCgGCggACCCCcggaggcgCCUGCCccgCCACCCa -3'
miRNA:   3'- uaGGaUG--UGGGG--------GGACGGaa-GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 23814 0.67 0.703617
Target:  5'- cUCUUugGCCCCCUgcgcGCCUcggGCCCg -3'
miRNA:   3'- uAGGAugUGGGGGGa---CGGAaggUGGG- -5'
5543 5' -59.6 NC_001806.1 + 81911 0.67 0.703617
Target:  5'- uUCCggcCACCCCCagcccgGCCU-CgGCCCc -3'
miRNA:   3'- uAGGau-GUGGGGGga----CGGAaGgUGGG- -5'
5543 5' -59.6 NC_001806.1 + 147918 0.67 0.703617
Target:  5'- cGUCCg--GCCCCUCgGCCgccCCGCCUc -3'
miRNA:   3'- -UAGGaugUGGGGGGaCGGaa-GGUGGG- -5'
5543 5' -59.6 NC_001806.1 + 60019 0.67 0.703617
Target:  5'- gGUCCggaGCCgCgCUGCCgUCCGCCg -3'
miRNA:   3'- -UAGGaugUGGgGgGACGGaAGGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.