miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5545 5' -52.4 NC_001806.1 + 141615 1.12 0.005113
Target:  5'- gCCAAGACAUUCCGAAGACUCGGGGGAg -3'
miRNA:   3'- -GGUUCUGUAAGGCUUCUGAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 76120 0.8 0.413088
Target:  5'- aCGAGGCcgUCCuacaccugucgGAAGACUUGGGGGGc -3'
miRNA:   3'- gGUUCUGuaAGG-----------CUUCUGAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 38384 0.77 0.546259
Target:  5'- uCCAGGuCGUcgcggcggcucUCCGccGGCUCGGGGGGg -3'
miRNA:   3'- -GGUUCuGUA-----------AGGCuuCUGAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 77126 0.75 0.69021
Target:  5'- gCCGAG-CGggCCGggGccguggaggaGCUCGGGGGGc -3'
miRNA:   3'- -GGUUCuGUaaGGCuuC----------UGAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 129695 0.74 0.710533
Target:  5'- uCC-GGACGccucUCCGGAGGCcCGGGGGGc -3'
miRNA:   3'- -GGuUCUGUa---AGGCUUCUGaGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 124086 0.74 0.720597
Target:  5'- cCCGGGGC---CCGAAGcUUCGGGGGGu -3'
miRNA:   3'- -GGUUCUGuaaGGCUUCuGAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 115233 0.72 0.824092
Target:  5'- cCgGGGACGcgccgCCGggGGCguuuacgCGGGGGAc -3'
miRNA:   3'- -GgUUCUGUaa---GGCuuCUGa------GCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 147278 0.72 0.832605
Target:  5'- gCgGAGGCcg-CCGAGGACgucaGGGGGGu -3'
miRNA:   3'- -GgUUCUGuaaGGCUUCUGag--CCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 151547 0.71 0.872225
Target:  5'- gCCcGGGCgg-CCGggGGCggCGGGGGc -3'
miRNA:   3'- -GGuUCUGuaaGGCuuCUGa-GCCCCCu -5'
5545 5' -52.4 NC_001806.1 + 150627 0.71 0.872225
Target:  5'- cCCAauGGGCcgggccCCGAAGACUCGGcGGAc -3'
miRNA:   3'- -GGU--UCUGuaa---GGCUUCUGAGCCcCCU- -5'
5545 5' -52.4 NC_001806.1 + 33993 0.71 0.849064
Target:  5'- gCCGGGGCAggggCGggGGCgugggCGGGGGu -3'
miRNA:   3'- -GGUUCUGUaag-GCuuCUGa----GCCCCCu -5'
5545 5' -52.4 NC_001806.1 + 10379 0.71 0.864717
Target:  5'- gCCAAGACc--UCGggGGggCGGGGGGa -3'
miRNA:   3'- -GGUUCUGuaaGGCuuCUgaGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 93273 0.71 0.879513
Target:  5'- uCCGGGGCAUuaucUCCGAGGGCg-GGGcGGc -3'
miRNA:   3'- -GGUUCUGUA----AGGCUUCUGagCCC-CCu -5'
5545 5' -52.4 NC_001806.1 + 118582 0.71 0.879513
Target:  5'- cCCAcGcCcUUcCCGcGGACUCGGGGGAc -3'
miRNA:   3'- -GGUuCuGuAA-GGCuUCUGAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 29118 0.7 0.886576
Target:  5'- gCAGGGCGUggaUGggGGggcgguCUCGGGGGGg -3'
miRNA:   3'- gGUUCUGUAag-GCuuCU------GAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 84423 0.7 0.900007
Target:  5'- cCCGAGACGcagcCCGggGA--CGGGGGc -3'
miRNA:   3'- -GGUUCUGUaa--GGCuuCUgaGCCCCCu -5'
5545 5' -52.4 NC_001806.1 + 106830 0.7 0.906368
Target:  5'- cCCAguuccugucgcGGGCAUaCgCGGAGuuuuuCUCGGGGGAc -3'
miRNA:   3'- -GGU-----------UCUGUAaG-GCUUCu----GAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 72626 0.69 0.929391
Target:  5'- aCAGGGCc-UCCG-AGACauccCGGGGGAc -3'
miRNA:   3'- gGUUCUGuaAGGCuUCUGa---GCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 149011 0.69 0.934536
Target:  5'- aCCcAGACA-UCCGGggcGGGCUaaGGGGAa -3'
miRNA:   3'- -GGuUCUGUaAGGCU---UCUGAgcCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 113301 0.69 0.929391
Target:  5'- -gGGGACGUUCCcccgGccGGCcCGGGGGAg -3'
miRNA:   3'- ggUUCUGUAAGG----CuuCUGaGCCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.