miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5549 3' -62.4 NC_001806.1 + 24003 0.66 0.676229
Target:  5'- uGGCgGCccUGGCCaaCCGgcugUgCGGGCCg -3'
miRNA:   3'- -CCG-CGacACCGGagGGCa---AgGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 116534 0.66 0.676229
Target:  5'- uGGCGCgcgaaaucGUGGCgCggCUCGUggccaggggcaUCCGGGaCCu -3'
miRNA:   3'- -CCGCGa-------CACCG-Ga-GGGCA-----------AGGCCC-GG- -5'
5549 3' -62.4 NC_001806.1 + 108543 0.66 0.676229
Target:  5'- cGCGUgcgGcUGGCCgcgCCCGccgcUCCGcGGUCa -3'
miRNA:   3'- cCGCGa--C-ACCGGa--GGGCa---AGGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 23717 0.66 0.676229
Target:  5'- cGCGCgGUGcGCCgggCCCGcccccgCCGcccaGGCCg -3'
miRNA:   3'- cCGCGaCAC-CGGa--GGGCaa----GGC----CCGG- -5'
5549 3' -62.4 NC_001806.1 + 72534 0.66 0.673332
Target:  5'- cGGCGUg--GGCC-CCCGggaggggguagggggCCcgGGGCCa -3'
miRNA:   3'- -CCGCGacaCCGGaGGGCaa-------------GG--CCCGG- -5'
5549 3' -62.4 NC_001806.1 + 3969 0.66 0.670432
Target:  5'- cGCGCggGUucuggagccaccccaGGCCUCCgCG-UCCGGGgUg -3'
miRNA:   3'- cCGCGa-CA---------------CCGGAGG-GCaAGGCCCgG- -5'
5549 3' -62.4 NC_001806.1 + 37765 0.66 0.666561
Target:  5'- cGGCgGCgg-GcGCCUUUCGcUCCGgGGCCg -3'
miRNA:   3'- -CCG-CGacaC-CGGAGGGCaAGGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 134316 0.66 0.666561
Target:  5'- gGGCggGUUGuUGGCCagCagGUaCCGGGCCa -3'
miRNA:   3'- -CCG--CGAC-ACCGGagGg-CAaGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 35823 0.66 0.656868
Target:  5'- gGGCGCgugGcGGCCUCCUa----GGGUCa -3'
miRNA:   3'- -CCGCGa--CaCCGGAGGGcaaggCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 11259 0.66 0.656868
Target:  5'- cGGUuaUGUGGUgCUCCCGg-CCaGuGGCCg -3'
miRNA:   3'- -CCGcgACACCG-GAGGGCaaGG-C-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 42379 0.66 0.656868
Target:  5'- aGGuCGUacGUGGCC-CCCGcgCCccccagacgcuGGGCCu -3'
miRNA:   3'- -CC-GCGa-CACCGGaGGGCaaGG-----------CCCGG- -5'
5549 3' -62.4 NC_001806.1 + 119903 0.66 0.647157
Target:  5'- cGGCGC--UGGCCacggCCCugaCCGaGGCCu -3'
miRNA:   3'- -CCGCGacACCGGa---GGGcaaGGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 32982 0.66 0.647157
Target:  5'- -cCGCcG-GGgC-CCCGggCCGGGCCg -3'
miRNA:   3'- ccGCGaCaCCgGaGGGCaaGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 1646 0.66 0.644241
Target:  5'- cGGCGUgcgaGUgGGCCUCcuccucgcagaaguCCGgcgcgCCGGGCg -3'
miRNA:   3'- -CCGCGa---CA-CCGGAG--------------GGCaa---GGCCCGg -5'
5549 3' -62.4 NC_001806.1 + 57833 0.66 0.637435
Target:  5'- gGGUGCgGUGGgCgacCCCGUcuuagguuUCUuuaGGGCCg -3'
miRNA:   3'- -CCGCGaCACCgGa--GGGCA--------AGG---CCCGG- -5'
5549 3' -62.4 NC_001806.1 + 135596 0.66 0.637435
Target:  5'- cGCGCUGcUGGCgCUCCa-----GGGCCc -3'
miRNA:   3'- cCGCGAC-ACCG-GAGGgcaaggCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 30177 0.66 0.637435
Target:  5'- -cCGCcccgGGCCcCCCGcgUCCGcGGCCg -3'
miRNA:   3'- ccGCGaca-CCGGaGGGCa-AGGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 3351 0.66 0.637435
Target:  5'- gGGgGCUGgcgGGCCgggcCCCGgccagccCCGGGaCg -3'
miRNA:   3'- -CCgCGACa--CCGGa---GGGCaa-----GGCCCgG- -5'
5549 3' -62.4 NC_001806.1 + 2675 0.66 0.637435
Target:  5'- gGGCGCcgccgUGUGGCUgggcCCCGg---GGGCUg -3'
miRNA:   3'- -CCGCG-----ACACCGGa---GGGCaaggCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 150680 0.66 0.627709
Target:  5'- cGCGCUGgcggccgccgaUGGCCagUCCCGcccCCGaGGCg -3'
miRNA:   3'- cCGCGAC-----------ACCGG--AGGGCaa-GGC-CCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.