miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5549 3' -62.4 NC_001806.1 + 23893 0.66 0.627709
Target:  5'- uGCGCgugGUGGUgcuguaCUCgCCGcugCCGGGCg -3'
miRNA:   3'- cCGCGa--CACCG------GAG-GGCaa-GGCCCGg -5'
5549 3' -62.4 NC_001806.1 + 27776 0.66 0.626737
Target:  5'- cGgGUUG-GGCC-CCCaaaucggGggCCGGGCCg -3'
miRNA:   3'- cCgCGACaCCGGaGGG-------CaaGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 5599 0.66 0.617987
Target:  5'- gGGgGCccGUGGCCgcggCCCGUUggucgaaccCCcGGCCc -3'
miRNA:   3'- -CCgCGa-CACCGGa---GGGCAA---------GGcCCGG- -5'
5549 3' -62.4 NC_001806.1 + 88782 0.66 0.617987
Target:  5'- cGGCcacccgGUGGCCUUCCGgagUCaGGCCc -3'
miRNA:   3'- -CCGcga---CACCGGAGGGCaa-GGcCCGG- -5'
5549 3' -62.4 NC_001806.1 + 51752 0.66 0.617987
Target:  5'- uGGCGCcaaagcUGcUGGCgCgcacCCCGUUCaagagcgGGGCCg -3'
miRNA:   3'- -CCGCG------AC-ACCG-Ga---GGGCAAGg------CCCGG- -5'
5549 3' -62.4 NC_001806.1 + 91145 0.66 0.617987
Target:  5'- -cCGC-GUGGCCg-CUGUUCgaGGGCCa -3'
miRNA:   3'- ccGCGaCACCGGagGGCAAGg-CCCGG- -5'
5549 3' -62.4 NC_001806.1 + 79845 0.66 0.617987
Target:  5'- uGGUGUcugGUGuGCCccUCCCGc-UCGGGCCc -3'
miRNA:   3'- -CCGCGa--CAC-CGG--AGGGCaaGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 57326 0.66 0.616043
Target:  5'- cGCGaggUGUGGCCguccgucgucgaCCCGUcCCuGGCCg -3'
miRNA:   3'- cCGCg--ACACCGGa-----------GGGCAaGGcCCGG- -5'
5549 3' -62.4 NC_001806.1 + 59976 0.67 0.598577
Target:  5'- cGGCGCgGcaccucucUGGCCUcggggaCCCGggggacggCCGGGUCc -3'
miRNA:   3'- -CCGCGaC--------ACCGGA------GGGCaa------GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 73186 0.67 0.598577
Target:  5'- aGGCGCUGaagacucGCCgcucgCCCGagcccCCGGGCg -3'
miRNA:   3'- -CCGCGACac-----CGGa----GGGCaa---GGCCCGg -5'
5549 3' -62.4 NC_001806.1 + 64811 0.67 0.598577
Target:  5'- gGGaCGggGUaGGCCgugCCCGUUCCcagacguGGCCg -3'
miRNA:   3'- -CC-GCgaCA-CCGGa--GGGCAAGGc------CCGG- -5'
5549 3' -62.4 NC_001806.1 + 84901 0.67 0.598577
Target:  5'- uGGUGCgucgGGCCUCCCGgaagagCCu-GCCg -3'
miRNA:   3'- -CCGCGaca-CCGGAGGGCaa----GGccCGG- -5'
5549 3' -62.4 NC_001806.1 + 75984 0.67 0.588903
Target:  5'- aGCGC---GGCCUUCgGggCCGcGGCCg -3'
miRNA:   3'- cCGCGacaCCGGAGGgCaaGGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 1443 0.67 0.579257
Target:  5'- cGGCGCcgGcGGCagggCCC---CCGGGCCg -3'
miRNA:   3'- -CCGCGa-CaCCGga--GGGcaaGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 1763 0.67 0.579257
Target:  5'- cGCGCgGggacaugGGCa--CCGgcgugUCCGGGCCg -3'
miRNA:   3'- cCGCGaCa------CCGgagGGCa----AGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 34333 0.67 0.575408
Target:  5'- gGGCGCUGgagauaacGGCC-CCCGgggaacgggggaCCGGGgCu -3'
miRNA:   3'- -CCGCGACa-------CCGGaGGGCaa----------GGCCCgG- -5'
5549 3' -62.4 NC_001806.1 + 137972 0.67 0.569645
Target:  5'- uGCGCgaGUacgcccGCCUCUCGUauagCUGGGCCa -3'
miRNA:   3'- cCGCGa-CAc-----CGGAGGGCAa---GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 1697 0.67 0.569645
Target:  5'- uGGCGUcgGUGGUC-CCCGaggCCGccgcccGGCCg -3'
miRNA:   3'- -CCGCGa-CACCGGaGGGCaa-GGC------CCGG- -5'
5549 3' -62.4 NC_001806.1 + 46071 0.67 0.569645
Target:  5'- cGGaCGC---GGCgUCCCGUUuCCGGGgCg -3'
miRNA:   3'- -CC-GCGacaCCGgAGGGCAA-GGCCCgG- -5'
5549 3' -62.4 NC_001806.1 + 131949 0.67 0.568686
Target:  5'- gGGCGCUGUacgcgugcguccuGGCggCCCuGgagcgccagaCCGGGCCg -3'
miRNA:   3'- -CCGCGACA-------------CCGgaGGG-Caa--------GGCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.