miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5549 3' -62.4 NC_001806.1 + 30426 0.67 0.565811
Target:  5'- gGGCGUggaggGUGGgcacgggcCCUCCCGcggcgccgcccccUCCGGcGCCg -3'
miRNA:   3'- -CCGCGa----CACC--------GGAGGGCa------------AGGCC-CGG- -5'
5549 3' -62.4 NC_001806.1 + 93997 0.67 0.560073
Target:  5'- cGGCGCcGcgagaUGGCCgcCCCGgugUCCGaGCCc -3'
miRNA:   3'- -CCGCGaC-----ACCGGa-GGGCa--AGGCcCGG- -5'
5549 3' -62.4 NC_001806.1 + 41620 0.67 0.560073
Target:  5'- cGGgGgUGUGGggcCCUgCUGUUCCGuggcGGCCa -3'
miRNA:   3'- -CCgCgACACC---GGAgGGCAAGGC----CCGG- -5'
5549 3' -62.4 NC_001806.1 + 145968 0.68 0.550546
Target:  5'- uGUGgUGUGGCCgacCCCcUUuuGGGCg -3'
miRNA:   3'- cCGCgACACCGGa--GGGcAAggCCCGg -5'
5549 3' -62.4 NC_001806.1 + 1529 0.68 0.550546
Target:  5'- gGGCGCaaaaGUcccuccgcGGCCcgcgccaCCGggCCGGGCCg -3'
miRNA:   3'- -CCGCGa---CA--------CCGGag-----GGCaaGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 76555 0.68 0.550546
Target:  5'- cGGgGCUGcgggaggugcUGGCCgcgCgCGagcgCCGGGCCc -3'
miRNA:   3'- -CCgCGAC----------ACCGGa--GgGCaa--GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 150872 0.68 0.550546
Target:  5'- cGGCuccGCg--GGCCagggCCCGggCaCGGGCCu -3'
miRNA:   3'- -CCG---CGacaCCGGa---GGGCaaG-GCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 47528 0.68 0.541069
Target:  5'- cGGCGaC-GUGGCCUUCCcuacgcUUCC-GGCCa -3'
miRNA:   3'- -CCGC-GaCACCGGAGGGc-----AAGGcCCGG- -5'
5549 3' -62.4 NC_001806.1 + 50081 0.68 0.541069
Target:  5'- cGGCGUU---GCgUCCCG-UCgGGGCCg -3'
miRNA:   3'- -CCGCGAcacCGgAGGGCaAGgCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 73057 0.68 0.541069
Target:  5'- gGGcCGCgGUccccGCCU-CCGUUCCGGaGCCu -3'
miRNA:   3'- -CC-GCGaCAc---CGGAgGGCAAGGCC-CGG- -5'
5549 3' -62.4 NC_001806.1 + 119586 0.68 0.540124
Target:  5'- cGGUGCUGgcgGGUCUggagcccCCCGgcggGGGCCg -3'
miRNA:   3'- -CCGCGACa--CCGGA-------GGGCaaggCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 32945 0.68 0.531647
Target:  5'- gGGcCGUUGUGGggcCCCGggCCGgGGCCc -3'
miRNA:   3'- -CC-GCGACACCggaGGGCaaGGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 4288 0.68 0.531647
Target:  5'- cGGgGCUGcccGGCCgugaagcggCCCGUggcgUCGcGGCCg -3'
miRNA:   3'- -CCgCGACa--CCGGa--------GGGCAa---GGC-CCGG- -5'
5549 3' -62.4 NC_001806.1 + 22176 0.68 0.531647
Target:  5'- gGGCGCcccggcggccgUGUGGgCgCCCGagCUGGGCg -3'
miRNA:   3'- -CCGCG-----------ACACCgGaGGGCaaGGCCCGg -5'
5549 3' -62.4 NC_001806.1 + 74873 0.68 0.531647
Target:  5'- uGGCGaccCUGcgGGCCUCCCugccggCGGGCUg -3'
miRNA:   3'- -CCGC---GACa-CCGGAGGGcaag--GCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 37854 0.68 0.531647
Target:  5'- uGGCGCacgccccgUGUccgcuGGCCUCCgGgugggUCGGGCUg -3'
miRNA:   3'- -CCGCG--------ACA-----CCGGAGGgCaa---GGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 9831 0.68 0.528832
Target:  5'- cGCGCUGUGGgaggggcuguuccaCCaCCgCGUUCCGGuacugcGCCg -3'
miRNA:   3'- cCGCGACACC--------------GGaGG-GCAAGGCC------CGG- -5'
5549 3' -62.4 NC_001806.1 + 78041 0.68 0.526023
Target:  5'- uGGCGCUgGUGGCCagcucCCCGgaacacauuuacaccUUuuGGcGCCu -3'
miRNA:   3'- -CCGCGA-CACCGGa----GGGC---------------AAggCC-CGG- -5'
5549 3' -62.4 NC_001806.1 + 20105 0.68 0.522286
Target:  5'- cGGCGCcGUcugcgGGCgUCggUCGcgCCGGGCCu -3'
miRNA:   3'- -CCGCGaCA-----CCGgAG--GGCaaGGCCCGG- -5'
5549 3' -62.4 NC_001806.1 + 62752 0.68 0.522286
Target:  5'- gGGCGCagc-GUCUCgCCGUcCCGGGUCa -3'
miRNA:   3'- -CCGCGacacCGGAG-GGCAaGGCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.