miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5551 3' -62.7 NC_001806.1 + 4752 0.66 0.625746
Target:  5'- -gGCCCGGuCGCCG-GCGGcGUcGGcUGCGu -3'
miRNA:   3'- gaCGGGCU-GCGGCgCGUC-CA-CC-ACGU- -5'
5551 3' -62.7 NC_001806.1 + 119182 0.66 0.622795
Target:  5'- uCUGCuuGGCGCCGCcGCcccgccggccgcgaAGGaGGcUGCGg -3'
miRNA:   3'- -GACGggCUGCGGCG-CG--------------UCCaCC-ACGU- -5'
5551 3' -62.7 NC_001806.1 + 52587 0.66 0.615912
Target:  5'- -gGCCCGGgGgggcaUCGCGCGGGgGGUGgGa -3'
miRNA:   3'- gaCGGGCUgC-----GGCGCGUCCaCCACgU- -5'
5551 3' -62.7 NC_001806.1 + 136549 0.66 0.615912
Target:  5'- -cGCCCGGCGCaaaGCAGGcgaccaacccgUGG-GCAa -3'
miRNA:   3'- gaCGGGCUGCGgcgCGUCC-----------ACCaCGU- -5'
5551 3' -62.7 NC_001806.1 + 44652 0.66 0.615912
Target:  5'- -cGCCCucGGCGUCGCGCcGGUaGG-GCc -3'
miRNA:   3'- gaCGGG--CUGCGGCGCGuCCA-CCaCGu -5'
5551 3' -62.7 NC_001806.1 + 141706 0.66 0.614929
Target:  5'- cCUGgCCGAUGUaaccaCGCGCAccucgucGGgGGUGCAa -3'
miRNA:   3'- -GACgGGCUGCG-----GCGCGU-------CCaCCACGU- -5'
5551 3' -62.7 NC_001806.1 + 30384 0.66 0.60609
Target:  5'- gUGCCgGGCG-CGUGCGacGGUGGcGCGc -3'
miRNA:   3'- gACGGgCUGCgGCGCGU--CCACCaCGU- -5'
5551 3' -62.7 NC_001806.1 + 51582 0.66 0.60609
Target:  5'- -cGCCacccaGGCGCUGgGCgAGGUGGaGCu -3'
miRNA:   3'- gaCGGg----CUGCGGCgCG-UCCACCaCGu -5'
5551 3' -62.7 NC_001806.1 + 50556 0.66 0.600204
Target:  5'- gCUGCUCGccaacagcgggcucaACGCCGUGCuGGgcgcugcGGUGUAc -3'
miRNA:   3'- -GACGGGC---------------UGCGGCGCGuCCa------CCACGU- -5'
5551 3' -62.7 NC_001806.1 + 24274 0.66 0.596285
Target:  5'- gCUGCCCGccgugcaguGCGCCGUGCGcuggccGGcGGcGCGg -3'
miRNA:   3'- -GACGGGC---------UGCGGCGCGU------CCaCCaCGU- -5'
5551 3' -62.7 NC_001806.1 + 85747 0.66 0.595306
Target:  5'- -gGUCCGGaGCCGCGCggccacgucguccGGGgGGUGCc -3'
miRNA:   3'- gaCGGGCUgCGGCGCG-------------UCCaCCACGu -5'
5551 3' -62.7 NC_001806.1 + 1622 0.66 0.586505
Target:  5'- -cGCCCaGGCcccaGCgCGCGCAGGcgGcGUGCGa -3'
miRNA:   3'- gaCGGG-CUG----CG-GCGCGUCCa-C-CACGU- -5'
5551 3' -62.7 NC_001806.1 + 143288 0.66 0.576755
Target:  5'- gUGUCgGugGUgGUGguGGUGGUGg- -3'
miRNA:   3'- gACGGgCugCGgCGCguCCACCACgu -5'
5551 3' -62.7 NC_001806.1 + 77188 0.66 0.576755
Target:  5'- -cGCCCG--GCUGCGggacgAGGUGGUGCc -3'
miRNA:   3'- gaCGGGCugCGGCGCg----UCCACCACGu -5'
5551 3' -62.7 NC_001806.1 + 24654 0.66 0.567042
Target:  5'- -gGCCCGuguacgugGCGCUgggGCGCgAGGcGGUGCGc -3'
miRNA:   3'- gaCGGGC--------UGCGG---CGCG-UCCaCCACGU- -5'
5551 3' -62.7 NC_001806.1 + 74036 0.66 0.567042
Target:  5'- -gGcCCCGAgGCCGUuCAGGUucggcuggaggaGGUGCGg -3'
miRNA:   3'- gaC-GGGCUgCGGCGcGUCCA------------CCACGU- -5'
5551 3' -62.7 NC_001806.1 + 102355 0.66 0.567042
Target:  5'- --cCCCGGgGCCGC-CGGGagcaccccgUGGUGCAu -3'
miRNA:   3'- gacGGGCUgCGGCGcGUCC---------ACCACGU- -5'
5551 3' -62.7 NC_001806.1 + 143230 0.66 0.567042
Target:  5'- --cCCCaAC-CCGUGCuGGUGGUGCGg -3'
miRNA:   3'- gacGGGcUGcGGCGCGuCCACCACGU- -5'
5551 3' -62.7 NC_001806.1 + 151142 0.67 0.547748
Target:  5'- -cGCCCGcGCGUCGCaggcGCAGGcgcgccaGGUGCu -3'
miRNA:   3'- gaCGGGC-UGCGGCG----CGUCCa------CCACGu -5'
5551 3' -62.7 NC_001806.1 + 20100 0.67 0.538178
Target:  5'- gUGgCCGGCGCCGUcuGCGGGcgucGGUcGCGc -3'
miRNA:   3'- gACgGGCUGCGGCG--CGUCCa---CCA-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.