miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5552 3' -55.5 NC_001806.1 + 65735 0.66 0.911542
Target:  5'- cGGCUGGgCGgcUGGCCAUuucaacAGACGCgGc -3'
miRNA:   3'- cUCGACCgGU--ACCGGUA------UUUGCGgCu -5'
5552 3' -55.5 NC_001806.1 + 41428 0.66 0.911542
Target:  5'- cAGC-GcGCCGUGGUCGggguGCGCCGc -3'
miRNA:   3'- cUCGaC-CGGUACCGGUauu-UGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 17606 0.66 0.911542
Target:  5'- aGAGCa--CCGaGGUCGUGGACGCCGu -3'
miRNA:   3'- -CUCGaccGGUaCCGGUAUUUGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 113411 0.66 0.907857
Target:  5'- gGAGCUGggggugggacgccacGCCAUGGCCcc---CGCCa- -3'
miRNA:   3'- -CUCGAC---------------CGGUACCGGuauuuGCGGcu -5'
5552 3' -55.5 NC_001806.1 + 23209 0.66 0.905352
Target:  5'- -uGCUGGCgGcggcGGCCAgcgcaccGGACGCCGc -3'
miRNA:   3'- cuCGACCGgUa---CCGGUa------UUUGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 116657 0.66 0.905352
Target:  5'- -uGCUGGCggaCGUccaacaacucGGucCCGUAAACGCCGAg -3'
miRNA:   3'- cuCGACCG---GUA----------CC--GGUAUUUGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 67790 0.66 0.905352
Target:  5'- -uGUUGGCCGacUGGCCcgGcGCGuCCGu -3'
miRNA:   3'- cuCGACCGGU--ACCGGuaUuUGC-GGCu -5'
5552 3' -55.5 NC_001806.1 + 105144 0.66 0.905352
Target:  5'- gGGGC-GGCCGUGccGCCccaGggUGCCGAg -3'
miRNA:   3'- -CUCGaCCGGUAC--CGGua-UuuGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 114306 0.66 0.905352
Target:  5'- -uGCUGGCCcacaacAUGGCCG--AACGCa-- -3'
miRNA:   3'- cuCGACCGG------UACCGGUauUUGCGgcu -5'
5552 3' -55.5 NC_001806.1 + 75603 0.66 0.898919
Target:  5'- gGAGCUGGgaAaGGUCAUcgGCGCCa- -3'
miRNA:   3'- -CUCGACCggUaCCGGUAuuUGCGGcu -5'
5552 3' -55.5 NC_001806.1 + 37519 0.66 0.898919
Target:  5'- -uGCgauagaGGCUcgGGCCGUGGGCGaCCa- -3'
miRNA:   3'- cuCGa-----CCGGuaCCGGUAUUUGC-GGcu -5'
5552 3' -55.5 NC_001806.1 + 63386 0.66 0.898919
Target:  5'- gGAGCcGGCgAUGGCCGcccccUGggUGUCGu -3'
miRNA:   3'- -CUCGaCCGgUACCGGU-----AUuuGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 33109 0.66 0.898919
Target:  5'- cGAGCgGGuCCGgacggGGCCcgGAcCGCCGc -3'
miRNA:   3'- -CUCGaCC-GGUa----CCGGuaUUuGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 23695 0.66 0.898919
Target:  5'- -cGCgGGCCcUGGCCucgauCGCCGc -3'
miRNA:   3'- cuCGaCCGGuACCGGuauuuGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 128511 0.66 0.892247
Target:  5'- cAGCgUGGCgugcggCAUGGCCAUGcGgGCCGc -3'
miRNA:   3'- cUCG-ACCG------GUACCGGUAUuUgCGGCu -5'
5552 3' -55.5 NC_001806.1 + 65611 0.66 0.892247
Target:  5'- -cGCUGGCaguacacgugGUGGCCGUGGGCGagaggggccCCGGc -3'
miRNA:   3'- cuCGACCGg---------UACCGGUAUUUGC---------GGCU- -5'
5552 3' -55.5 NC_001806.1 + 76570 0.66 0.892247
Target:  5'- -uGCUGGCCGcGcGC---GAGCGCCGGg -3'
miRNA:   3'- cuCGACCGGUaC-CGguaUUUGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 32955 0.66 0.892247
Target:  5'- gGGGCcccgGGCCggGGCCccuUGGGucCGCCGGg -3'
miRNA:   3'- -CUCGa---CCGGuaCCGGu--AUUU--GCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 89578 0.66 0.885339
Target:  5'- cGGCcGGCCG-GGCuUAUGGAcCGCCGGc -3'
miRNA:   3'- cUCGaCCGGUaCCG-GUAUUU-GCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 115143 0.66 0.885339
Target:  5'- aGGGaUGGaCCAcGGCCA-GGACGCCGu -3'
miRNA:   3'- -CUCgACC-GGUaCCGGUaUUUGCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.