Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5553 | 3' | -56.4 | NC_001806.1 | + | 151635 | 0.66 | 0.892346 |
Target: 5'- aGGCaaGCAUGUGCgUGCaGAGGcgaGUAguGCu -3' miRNA: 3'- -CCG--UGUACGCG-ACG-CUCCa--CGUguCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 13148 | 0.66 | 0.892346 |
Target: 5'- aGGCA---G-GCUGaCGGGGggaUGCGCAGCg -3' miRNA: 3'- -CCGUguaCgCGAC-GCUCC---ACGUGUCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 50585 | 0.66 | 0.892346 |
Target: 5'- uGCugG-GCGCUGCGGuGUacGCGCuGCa -3' miRNA: 3'- cCGugUaCGCGACGCUcCA--CGUGuCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 89511 | 0.66 | 0.892346 |
Target: 5'- uGGCGgAUccGgGCgGCGAGcugcUGCGCGGCg -3' miRNA: 3'- -CCGUgUA--CgCGaCGCUCc---ACGUGUCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 22957 | 0.66 | 0.888285 |
Target: 5'- cGCACGccgacgcgccccgccUGCGC-GCGuGGcUGCGCgAGCu -3' miRNA: 3'- cCGUGU---------------ACGCGaCGCuCC-ACGUG-UCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 106531 | 0.66 | 0.885532 |
Target: 5'- aGCugGUGCucgGgUGCGAugccgcgcuGGUGCGCGcGCg -3' miRNA: 3'- cCGugUACG---CgACGCU---------CCACGUGU-CG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 22544 | 0.66 | 0.885532 |
Target: 5'- uGGCGCGcgagaacgcgGCGCUGaCGGGG-GcCGCGGg -3' miRNA: 3'- -CCGUGUa---------CGCGAC-GCUCCaC-GUGUCg -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 2415 | 0.66 | 0.885532 |
Target: 5'- cGGCGCA-GCGggccCGAGGcGCGCAGg -3' miRNA: 3'- -CCGUGUaCGCgac-GCUCCaCGUGUCg -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 13059 | 0.66 | 0.885532 |
Target: 5'- cGGCGacgGUGCGCUGguucuCGGGGaugaagcgGgGCAGCa -3' miRNA: 3'- -CCGUg--UACGCGAC-----GCUCCa-------CgUGUCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 37795 | 0.66 | 0.885532 |
Target: 5'- gGGCGCGggggucCGCggGCGGGGggGCAaucgcCAGCg -3' miRNA: 3'- -CCGUGUac----GCGa-CGCUCCa-CGU-----GUCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 86665 | 0.66 | 0.878491 |
Target: 5'- aGC-CcgGCgGCcGUGAGGccgcgGCACAGCa -3' miRNA: 3'- cCGuGuaCG-CGaCGCUCCa----CGUGUCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 22587 | 0.66 | 0.878491 |
Target: 5'- cGGCGCcgGCGCagaUGaCGAGGggGuCGCcGCc -3' miRNA: 3'- -CCGUGuaCGCG---AC-GCUCCa-C-GUGuCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 94775 | 0.66 | 0.874161 |
Target: 5'- gGGCGCucuccguguuggaccAUGCGCUggcccggacGCGGGGgGCgacggGCAGCc -3' miRNA: 3'- -CCGUG---------------UACGCGA---------CGCUCCaCG-----UGUCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 66232 | 0.66 | 0.87123 |
Target: 5'- gGGCGgA-GCGUUGUGuGG-GCGgGGCg -3' miRNA: 3'- -CCGUgUaCGCGACGCuCCaCGUgUCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 2506 | 0.66 | 0.863752 |
Target: 5'- cGCACGcggccUGgGCgGCGGGGgcggGCcCGGCg -3' miRNA: 3'- cCGUGU-----ACgCGaCGCUCCa---CGuGUCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 1776 | 0.67 | 0.856064 |
Target: 5'- gGGCACcgGCGUgucCGGGccgaagcgcGUGCGCAcGCg -3' miRNA: 3'- -CCGUGuaCGCGac-GCUC---------CACGUGU-CG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 91742 | 0.67 | 0.856064 |
Target: 5'- uGUACA-GCGaCUGCGAcGUGCugGGa -3' miRNA: 3'- cCGUGUaCGC-GACGCUcCACGugUCg -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 71003 | 0.67 | 0.848172 |
Target: 5'- uGGCGCAUGCGCc-CGAGGacgcccccccGCAaAGCc -3' miRNA: 3'- -CCGUGUACGCGacGCUCCa---------CGUgUCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 24660 | 0.67 | 0.848172 |
Target: 5'- uGUACGUGgCGCUGgGGcgcgaggcGGUGCGCgccGGCc -3' miRNA: 3'- cCGUGUAC-GCGACgCU--------CCACGUG---UCG- -5' |
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5553 | 3' | -56.4 | NC_001806.1 | + | 90666 | 0.67 | 0.848172 |
Target: 5'- aGGUAaccauagGCGggGCgGAGGUGCACcGCa -3' miRNA: 3'- -CCGUgua----CGCgaCG-CUCCACGUGuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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