miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5553 3' -56.4 NC_001806.1 + 151635 0.66 0.892346
Target:  5'- aGGCaaGCAUGUGCgUGCaGAGGcgaGUAguGCu -3'
miRNA:   3'- -CCG--UGUACGCG-ACG-CUCCa--CGUguCG- -5'
5553 3' -56.4 NC_001806.1 + 13148 0.66 0.892346
Target:  5'- aGGCA---G-GCUGaCGGGGggaUGCGCAGCg -3'
miRNA:   3'- -CCGUguaCgCGAC-GCUCC---ACGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 50585 0.66 0.892346
Target:  5'- uGCugG-GCGCUGCGGuGUacGCGCuGCa -3'
miRNA:   3'- cCGugUaCGCGACGCUcCA--CGUGuCG- -5'
5553 3' -56.4 NC_001806.1 + 89511 0.66 0.892346
Target:  5'- uGGCGgAUccGgGCgGCGAGcugcUGCGCGGCg -3'
miRNA:   3'- -CCGUgUA--CgCGaCGCUCc---ACGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 22957 0.66 0.888285
Target:  5'- cGCACGccgacgcgccccgccUGCGC-GCGuGGcUGCGCgAGCu -3'
miRNA:   3'- cCGUGU---------------ACGCGaCGCuCC-ACGUG-UCG- -5'
5553 3' -56.4 NC_001806.1 + 37795 0.66 0.885532
Target:  5'- gGGCGCGggggucCGCggGCGGGGggGCAaucgcCAGCg -3'
miRNA:   3'- -CCGUGUac----GCGa-CGCUCCa-CGU-----GUCG- -5'
5553 3' -56.4 NC_001806.1 + 106531 0.66 0.885532
Target:  5'- aGCugGUGCucgGgUGCGAugccgcgcuGGUGCGCGcGCg -3'
miRNA:   3'- cCGugUACG---CgACGCU---------CCACGUGU-CG- -5'
5553 3' -56.4 NC_001806.1 + 22544 0.66 0.885532
Target:  5'- uGGCGCGcgagaacgcgGCGCUGaCGGGG-GcCGCGGg -3'
miRNA:   3'- -CCGUGUa---------CGCGAC-GCUCCaC-GUGUCg -5'
5553 3' -56.4 NC_001806.1 + 2415 0.66 0.885532
Target:  5'- cGGCGCA-GCGggccCGAGGcGCGCAGg -3'
miRNA:   3'- -CCGUGUaCGCgac-GCUCCaCGUGUCg -5'
5553 3' -56.4 NC_001806.1 + 13059 0.66 0.885532
Target:  5'- cGGCGacgGUGCGCUGguucuCGGGGaugaagcgGgGCAGCa -3'
miRNA:   3'- -CCGUg--UACGCGAC-----GCUCCa-------CgUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 86665 0.66 0.878491
Target:  5'- aGC-CcgGCgGCcGUGAGGccgcgGCACAGCa -3'
miRNA:   3'- cCGuGuaCG-CGaCGCUCCa----CGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 22587 0.66 0.878491
Target:  5'- cGGCGCcgGCGCagaUGaCGAGGggGuCGCcGCc -3'
miRNA:   3'- -CCGUGuaCGCG---AC-GCUCCa-C-GUGuCG- -5'
5553 3' -56.4 NC_001806.1 + 94775 0.66 0.874161
Target:  5'- gGGCGCucuccguguuggaccAUGCGCUggcccggacGCGGGGgGCgacggGCAGCc -3'
miRNA:   3'- -CCGUG---------------UACGCGA---------CGCUCCaCG-----UGUCG- -5'
5553 3' -56.4 NC_001806.1 + 66232 0.66 0.87123
Target:  5'- gGGCGgA-GCGUUGUGuGG-GCGgGGCg -3'
miRNA:   3'- -CCGUgUaCGCGACGCuCCaCGUgUCG- -5'
5553 3' -56.4 NC_001806.1 + 2506 0.66 0.863752
Target:  5'- cGCACGcggccUGgGCgGCGGGGgcggGCcCGGCg -3'
miRNA:   3'- cCGUGU-----ACgCGaCGCUCCa---CGuGUCG- -5'
5553 3' -56.4 NC_001806.1 + 1776 0.67 0.856064
Target:  5'- gGGCACcgGCGUgucCGGGccgaagcgcGUGCGCAcGCg -3'
miRNA:   3'- -CCGUGuaCGCGac-GCUC---------CACGUGU-CG- -5'
5553 3' -56.4 NC_001806.1 + 91742 0.67 0.856064
Target:  5'- uGUACA-GCGaCUGCGAcGUGCugGGa -3'
miRNA:   3'- cCGUGUaCGC-GACGCUcCACGugUCg -5'
5553 3' -56.4 NC_001806.1 + 90666 0.67 0.848172
Target:  5'- aGGUAaccauagGCGggGCgGAGGUGCACcGCa -3'
miRNA:   3'- -CCGUgua----CGCgaCG-CUCCACGUGuCG- -5'
5553 3' -56.4 NC_001806.1 + 75790 0.67 0.848172
Target:  5'- cGCcuGCAgGCGCUgGCGGGcacGCACGGCu -3'
miRNA:   3'- cCG--UGUaCGCGA-CGCUCca-CGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 71003 0.67 0.848172
Target:  5'- uGGCGCAUGCGCc-CGAGGacgcccccccGCAaAGCc -3'
miRNA:   3'- -CCGUGUACGCGacGCUCCa---------CGUgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.