miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5554 3' -63.9 NC_001806.1 + 33341 0.66 0.590302
Target:  5'- cGCCCC-UUGGCCgCCCCGGCUgcagggGGGCc -3'
miRNA:   3'- -UGGGGcGGUUGGaGGGGCCGA------CCUGc -5'
5554 3' -63.9 NC_001806.1 + 115212 0.66 0.590302
Target:  5'- cUUCCGCCGGCCcugcaacCCCCGG--GGACGc -3'
miRNA:   3'- uGGGGCGGUUGGa------GGGGCCgaCCUGC- -5'
5554 3' -63.9 NC_001806.1 + 45299 0.66 0.590302
Target:  5'- gGCCCgCGCgGggaGCCg-CCCGGCgaggaGGGCGg -3'
miRNA:   3'- -UGGG-GCGgU---UGGagGGGCCGa----CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 20765 0.66 0.590302
Target:  5'- uUCCCGCCGGCC-CCUgGGaCUauaugagcccgaGGACGc -3'
miRNA:   3'- uGGGGCGGUUGGaGGGgCC-GA------------CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 80203 0.66 0.586454
Target:  5'- cGCCCCGCCcccgacgucaGGCCcgCCCCccacauacuugacGCUGGAgGg -3'
miRNA:   3'- -UGGGGCGG----------UUGGa-GGGGc------------CGACCUgC- -5'
5554 3' -63.9 NC_001806.1 + 68566 0.66 0.580691
Target:  5'- gAUUCCGCCGGCCUgcgcaCCgCGGCggcccugGGGCc -3'
miRNA:   3'- -UGGGGCGGUUGGA-----GGgGCCGa------CCUGc -5'
5554 3' -63.9 NC_001806.1 + 667 0.66 0.580691
Target:  5'- uCCCCGgccCCAGcCCUCCCCGGCc----- -3'
miRNA:   3'- uGGGGC---GGUU-GGAGGGGCCGaccugc -5'
5554 3' -63.9 NC_001806.1 + 635 0.66 0.580691
Target:  5'- uCCCCGgccCCAGcCCUCCCCGGCc----- -3'
miRNA:   3'- uGGGGC---GGUU-GGAGGGGCCGaccugc -5'
5554 3' -63.9 NC_001806.1 + 42392 0.66 0.580691
Target:  5'- cCCCCGC--GCC-CCCCagacGCUGGGCc -3'
miRNA:   3'- uGGGGCGguUGGaGGGGc---CGACCUGc -5'
5554 3' -63.9 NC_001806.1 + 93859 0.66 0.580691
Target:  5'- cGCgCCGCCGACU--CCCGGCUugccGGuCGg -3'
miRNA:   3'- -UGgGGCGGUUGGagGGGCCGA----CCuGC- -5'
5554 3' -63.9 NC_001806.1 + 41215 0.66 0.577813
Target:  5'- aGCCCCGCgCcuaaaguggcccagGGCCUCguggagCCGGCgaaaggGGACGg -3'
miRNA:   3'- -UGGGGCG-G--------------UUGGAGg-----GGCCGa-----CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 118112 0.66 0.571112
Target:  5'- gGCCggucgUCGCCggUCUCCCUGGcCUGGcCc -3'
miRNA:   3'- -UGG-----GGCGGuuGGAGGGGCC-GACCuGc -5'
5554 3' -63.9 NC_001806.1 + 151251 0.66 0.571112
Target:  5'- aGCCCCGCCccCCgggCCCacgccgGGC-GGugGg -3'
miRNA:   3'- -UGGGGCGGuuGGa--GGGg-----CCGaCCugC- -5'
5554 3' -63.9 NC_001806.1 + 107347 0.66 0.571112
Target:  5'- cCUCCGgCAGCCgUUCuuGGCUGG-CGu -3'
miRNA:   3'- uGGGGCgGUUGG-AGGggCCGACCuGC- -5'
5554 3' -63.9 NC_001806.1 + 111262 0.66 0.570156
Target:  5'- cGCCuCUGCCAAuuUCUUCCUGGCacgcuuuUGGACc -3'
miRNA:   3'- -UGG-GGCGGUU--GGAGGGGCCG-------ACCUGc -5'
5554 3' -63.9 NC_001806.1 + 79990 0.66 0.570156
Target:  5'- uCCCgCGCCAACCcCCCCcaggguucccguaGGC-GGGCc -3'
miRNA:   3'- uGGG-GCGGUUGGaGGGG-------------CCGaCCUGc -5'
5554 3' -63.9 NC_001806.1 + 67188 0.66 0.565383
Target:  5'- gGCCUCGCCcagccgcucggucuGCCggCCUGGCgGGGCGc -3'
miRNA:   3'- -UGGGGCGGu-------------UGGagGGGCCGaCCUGC- -5'
5554 3' -63.9 NC_001806.1 + 59863 0.66 0.561572
Target:  5'- -gCCCGCaCGACggCCCaGGCcGGACGg -3'
miRNA:   3'- ugGGGCG-GUUGgaGGGgCCGaCCUGC- -5'
5554 3' -63.9 NC_001806.1 + 72115 0.66 0.561572
Target:  5'- uGCCCCGCaCAcacguuCUUCgCCGGCccgUGGGCc -3'
miRNA:   3'- -UGGGGCG-GUu-----GGAGgGGCCG---ACCUGc -5'
5554 3' -63.9 NC_001806.1 + 132836 0.66 0.561572
Target:  5'- -aCCCGCCcgcGGCCgucgggCCCGuCUGGACGg -3'
miRNA:   3'- ugGGGCGG---UUGGag----GGGCcGACCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.