miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5555 3' -66.5 NC_001806.1 + 24207 0.66 0.440048
Target:  5'- gCGCCUgCgaCUGGcCCgccgacgGGCCCGCGGu -3'
miRNA:   3'- -GCGGGgGg-GACCaGGa------CCGGGCGUCu -5'
5555 3' -66.5 NC_001806.1 + 67490 0.66 0.445133
Target:  5'- cCGCCcuccggggucccgaCCCCCUGGggagcCCUGGgCCGUcgcggcgAGAg -3'
miRNA:   3'- -GCGG--------------GGGGGACCa----GGACCgGGCG-------UCU- -5'
5555 3' -66.5 NC_001806.1 + 69966 0.66 0.448541
Target:  5'- uCGUCCCCUac-GUUCUGGCCCuGguGGu -3'
miRNA:   3'- -GCGGGGGGgacCAGGACCGGG-CguCU- -5'
5555 3' -66.5 NC_001806.1 + 128366 0.66 0.440048
Target:  5'- gGaCCCCCCUGGUgCaaaaaUGGgCCGCAa- -3'
miRNA:   3'- gCgGGGGGGACCAgG-----ACCgGGCGUcu -5'
5555 3' -66.5 NC_001806.1 + 57348 0.66 0.448541
Target:  5'- uCGaCCCgUCCCUGGccgUCCUccggggacacGGCCCGguGGc -3'
miRNA:   3'- -GC-GGG-GGGGACC---AGGA----------CCGGGCguCU- -5'
5555 3' -66.5 NC_001806.1 + 147325 0.66 0.448541
Target:  5'- gCGCCCCCCC-GGcCCUGaGUCgGaGGGg -3'
miRNA:   3'- -GCGGGGGGGaCCaGGAC-CGGgCgUCU- -5'
5555 3' -66.5 NC_001806.1 + 73290 0.66 0.431646
Target:  5'- uGCUCCgCCgc--CCUGGCCCGCgAGGu -3'
miRNA:   3'- gCGGGGgGGaccaGGACCGGGCG-UCU- -5'
5555 3' -66.5 NC_001806.1 + 150227 0.66 0.445133
Target:  5'- uGCCCCuCCCgccgacgcaacagGGgCUUGGCCUGCGu- -3'
miRNA:   3'- gCGGGG-GGGa------------CCaGGACCGGGCGUcu -5'
5555 3' -66.5 NC_001806.1 + 63918 0.66 0.445133
Target:  5'- uGCCCCCguugcgggcgaggaUggcacugacguugCUGGUgaUGGCCCGCAGGg -3'
miRNA:   3'- gCGGGGG--------------G-------------GACCAggACCGGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 90255 0.66 0.415128
Target:  5'- uCGCCguggcgCCCCUGGUCgUGGgccugaCCGUGGAg -3'
miRNA:   3'- -GCGGg-----GGGGACCAGgACCg-----GGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 32957 0.66 0.415128
Target:  5'- gGCCCcgggccggggCCCCUugGGUCCgccggGGCCC-CGGGc -3'
miRNA:   3'- gCGGG----------GGGGA--CCAGGa----CCGGGcGUCU- -5'
5555 3' -66.5 NC_001806.1 + 23493 0.66 0.431646
Target:  5'- cCGCgCCCCgUGG-CCgugucgcgccGGCCCGCcGAg -3'
miRNA:   3'- -GCGgGGGGgACCaGGa---------CCGGGCGuCU- -5'
5555 3' -66.5 NC_001806.1 + 131556 0.66 0.465796
Target:  5'- cCGCCCCCCCcccgucaccGGUuuccgcgacccaCCgGGCCCGgcCAGGc -3'
miRNA:   3'- -GCGGGGGGGa--------CCA------------GGaCCGGGC--GUCU- -5'
5555 3' -66.5 NC_001806.1 + 52561 0.66 0.440048
Target:  5'- gGCCUCCCCcggacgacaUGG-CCagcGGCCCGgGGGg -3'
miRNA:   3'- gCGGGGGGG---------ACCaGGa--CCGGGCgUCU- -5'
5555 3' -66.5 NC_001806.1 + 37587 0.66 0.445984
Target:  5'- gGCCCUCCUUGGcCCgccagcaccggGGCCCaggggcuauucgcgGCGGGa -3'
miRNA:   3'- gCGGGGGGGACCaGGa----------CCGGG--------------CGUCU- -5'
5555 3' -66.5 NC_001806.1 + 20159 0.66 0.431646
Target:  5'- cCGCCCCCCgccGcCCgGGCCCGCccccGGGg -3'
miRNA:   3'- -GCGGGGGGgacCaGGaCCGGGCG----UCU- -5'
5555 3' -66.5 NC_001806.1 + 66436 0.66 0.448541
Target:  5'- gCGCCCCCgCaGGUCC-GGCUgccaGCGGu -3'
miRNA:   3'- -GCGGGGGgGaCCAGGaCCGGg---CGUCu -5'
5555 3' -66.5 NC_001806.1 + 5060 0.66 0.440048
Target:  5'- gGCCCCCCgCUcgucgcGGUCUgGGCUCGgGGu -3'
miRNA:   3'- gCGGGGGG-GA------CCAGGaCCGGGCgUCu -5'
5555 3' -66.5 NC_001806.1 + 27600 0.66 0.415128
Target:  5'- aCGgCCCCUCgcgcaUUGGCCCGCGGGu -3'
miRNA:   3'- -GCgGGGGGGaccagGACCGGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 26407 0.66 0.431646
Target:  5'- cCGCCgCCCCC-GG-CCgcccgGGCCCaCGGGc -3'
miRNA:   3'- -GCGG-GGGGGaCCaGGa----CCGGGcGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.