miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5555 3' -66.5 NC_001806.1 + 135791 1.07 0.000453
Target:  5'- cCGCCCCCCCUGGUCCUGGCCCGCAGAc -3'
miRNA:   3'- -GCGGGGGGGACCAGGACCGGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 132675 0.8 0.047793
Target:  5'- aCGCCgCgCUCCUGGgggCCUGGCCCGCGGu -3'
miRNA:   3'- -GCGG-G-GGGGACCa--GGACCGGGCGUCu -5'
5555 3' -66.5 NC_001806.1 + 27072 0.79 0.055638
Target:  5'- gGCCCgugCCCgGGcCCUGGCCCGCGGAg -3'
miRNA:   3'- gCGGGg--GGGaCCaGGACCGGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 83026 0.78 0.073382
Target:  5'- uCGCCCCCCggGGUCCUGGCgagcgUCGCGGu -3'
miRNA:   3'- -GCGGGGGGgaCCAGGACCG-----GGCGUCu -5'
5555 3' -66.5 NC_001806.1 + 51013 0.76 0.1039
Target:  5'- cCGCCCCCgUaagcggcgGGUCCguguugGGCCCGCGGGu -3'
miRNA:   3'- -GCGGGGGgGa-------CCAGGa-----CCGGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 148436 0.74 0.13264
Target:  5'- uGCCCCCCCagGGUCa-GGUaCCGCGGGg -3'
miRNA:   3'- gCGGGGGGGa-CCAGgaCCG-GGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 125722 0.73 0.153244
Target:  5'- gCGCCCCUCUggccaucGGUCCccucUGGCCCGCcuGGAu -3'
miRNA:   3'- -GCGGGGGGGa------CCAGG----ACCGGGCG--UCU- -5'
5555 3' -66.5 NC_001806.1 + 123192 0.72 0.176709
Target:  5'- aGCaCCCCCCgGGUC---GCCCGCAGGg -3'
miRNA:   3'- gCG-GGGGGGaCCAGgacCGGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 106350 0.72 0.180918
Target:  5'- cCGCCCCCCCgaccgccGGUUggGGCCCgGCGGc -3'
miRNA:   3'- -GCGGGGGGGa------CCAGgaCCGGG-CGUCu -5'
5555 3' -66.5 NC_001806.1 + 69876 0.72 0.185215
Target:  5'- aCGCCCCCUCUGuccaCCUGGC-CGCGGc -3'
miRNA:   3'- -GCGGGGGGGACca--GGACCGgGCGUCu -5'
5555 3' -66.5 NC_001806.1 + 132501 0.72 0.189602
Target:  5'- aCGCCgCCCCCggGGcCCUGGCCCcCGu- -3'
miRNA:   3'- -GCGG-GGGGGa-CCaGGACCGGGcGUcu -5'
5555 3' -66.5 NC_001806.1 + 17174 0.72 0.189602
Target:  5'- gGCCCCCCCgggaaggcgGGUCUgUGGaCCGUAGGg -3'
miRNA:   3'- gCGGGGGGGa--------CCAGG-ACCgGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 57901 0.72 0.198651
Target:  5'- gCGCCCCCgCUUGGUCgUGGgagugaCCCGCGu- -3'
miRNA:   3'- -GCGGGGG-GGACCAGgACC------GGGCGUcu -5'
5555 3' -66.5 NC_001806.1 + 135005 0.71 0.21788
Target:  5'- uGCCCCcgCCCUGGUCC-GGCgCGCc-- -3'
miRNA:   3'- gCGGGG--GGGACCAGGaCCGgGCGucu -5'
5555 3' -66.5 NC_001806.1 + 65457 0.71 0.228079
Target:  5'- uGCCgcggCCCCCgGGUCCUGggggcGCCCGCGc- -3'
miRNA:   3'- gCGG----GGGGGaCCAGGAC-----CGGGCGUcu -5'
5555 3' -66.5 NC_001806.1 + 30844 0.71 0.228079
Target:  5'- gGCCCCCgCgCUGcUUCUGGgCCGCGGGg -3'
miRNA:   3'- gCGGGGG-G-GACcAGGACCgGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 125124 0.71 0.228079
Target:  5'- aGCCUCUCCUGGUgCUGGuguCCCGCc-- -3'
miRNA:   3'- gCGGGGGGGACCAgGACC---GGGCGucu -5'
5555 3' -66.5 NC_001806.1 + 107599 0.69 0.270555
Target:  5'- aGCCacccgauccgagaCCCCggucgaaGUCCUGGCCCaGCAGAc -3'
miRNA:   3'- gCGGg------------GGGGac-----CAGGACCGGG-CGUCU- -5'
5555 3' -66.5 NC_001806.1 + 64435 0.69 0.272958
Target:  5'- gGCCUCCCg-GGUCC-GGaUCCGCAGGu -3'
miRNA:   3'- gCGGGGGGgaCCAGGaCC-GGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 22909 0.69 0.279041
Target:  5'- aGCCCCCCgC-GG-CCggagGGaCCCGCGGGc -3'
miRNA:   3'- gCGGGGGG-GaCCaGGa---CC-GGGCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.