miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5555 3' -66.5 NC_001806.1 + 1237 0.69 0.311077
Target:  5'- gCGCCCCgCCCc-GUCCcGGCCCGUu-- -3'
miRNA:   3'- -GCGGGG-GGGacCAGGaCCGGGCGucu -5'
5555 3' -66.5 NC_001806.1 + 2209 0.66 0.457125
Target:  5'- uGCCCgCCCaGGcggccgugUCC-GGCCCGCAc- -3'
miRNA:   3'- gCGGGgGGGaCC--------AGGaCCGGGCGUcu -5'
5555 3' -66.5 NC_001806.1 + 2315 0.67 0.360494
Target:  5'- gGCCCCgCCgccggccaGGUCCUcGCCCgGCAGc -3'
miRNA:   3'- gCGGGGgGGa-------CCAGGAcCGGG-CGUCu -5'
5555 3' -66.5 NC_001806.1 + 5060 0.66 0.440048
Target:  5'- gGCCCCCCgCUcgucgcGGUCUgGGCUCGgGGu -3'
miRNA:   3'- gCGGGGGG-GA------CCAGGaCCGGGCgUCu -5'
5555 3' -66.5 NC_001806.1 + 5850 0.69 0.29153
Target:  5'- gGCCCCCC--GGUCCc-GCCCGcCGGAc -3'
miRNA:   3'- gCGGGGGGgaCCAGGacCGGGC-GUCU- -5'
5555 3' -66.5 NC_001806.1 + 5921 0.69 0.279041
Target:  5'- cCGCCCCCCCa----UUGGCCgGCGGGc -3'
miRNA:   3'- -GCGGGGGGGaccagGACCGGgCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 17174 0.72 0.189602
Target:  5'- gGCCCCCCCgggaaggcgGGUCUgUGGaCCGUAGGg -3'
miRNA:   3'- gCGGGGGGGa--------CCAGG-ACCgGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 20159 0.66 0.431646
Target:  5'- cCGCCCCCCgccGcCCgGGCCCGCccccGGGg -3'
miRNA:   3'- -GCGGGGGGgacCaGGaCCGGGCG----UCU- -5'
5555 3' -66.5 NC_001806.1 + 20301 0.68 0.345833
Target:  5'- cCGCCCCCUUggggcGGUCCc-GCCCGCcGGc -3'
miRNA:   3'- -GCGGGGGGGa----CCAGGacCGGGCGuCU- -5'
5555 3' -66.5 NC_001806.1 + 22909 0.69 0.279041
Target:  5'- aGCCCCCCgC-GG-CCggagGGaCCCGCGGGc -3'
miRNA:   3'- gCGGGGGG-GaCCaGGa---CC-GGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 23493 0.66 0.431646
Target:  5'- cCGCgCCCCgUGG-CCgugucgcgccGGCCCGCcGAg -3'
miRNA:   3'- -GCGgGGGGgACCaGGa---------CCGGGCGuCU- -5'
5555 3' -66.5 NC_001806.1 + 23810 0.66 0.456263
Target:  5'- cCGCCucuuuggCCCCCUGcGcgCCUcgGGCCCGCu-- -3'
miRNA:   3'- -GCGG-------GGGGGAC-Ca-GGA--CCGGGCGucu -5'
5555 3' -66.5 NC_001806.1 + 24207 0.66 0.440048
Target:  5'- gCGCCUgCgaCUGGcCCgccgacgGGCCCGCGGu -3'
miRNA:   3'- -GCGGGgGg-GACCaGGa------CCGGGCGUCu -5'
5555 3' -66.5 NC_001806.1 + 24762 0.67 0.384063
Target:  5'- aCGCCCCCCCgcUGGUgcugcgcggcgacgaCgacGGCCCGgGGGc -3'
miRNA:   3'- -GCGGGGGGG--ACCAg--------------Ga--CCGGGCgUCU- -5'
5555 3' -66.5 NC_001806.1 + 26407 0.66 0.431646
Target:  5'- cCGCCgCCCCC-GG-CCgcccgGGCCCaCGGGc -3'
miRNA:   3'- -GCGG-GGGGGaCCaGGa----CCGGGcGUCU- -5'
5555 3' -66.5 NC_001806.1 + 26670 0.66 0.448541
Target:  5'- cCGCCgCCCCCcGGcCCcGGCCCcCAc- -3'
miRNA:   3'- -GCGG-GGGGGaCCaGGaCCGGGcGUcu -5'
5555 3' -66.5 NC_001806.1 + 26958 0.67 0.391094
Target:  5'- gGCCgCCCgCCUGGcgcgCCgcggcucgugGGCCCGCGa- -3'
miRNA:   3'- gCGG-GGG-GGACCa---GGa---------CCGGGCGUcu -5'
5555 3' -66.5 NC_001806.1 + 27072 0.79 0.055638
Target:  5'- gGCCCgugCCCgGGcCCUGGCCCGCGGAg -3'
miRNA:   3'- gCGGGg--GGGaCCaGGACCGGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 27600 0.66 0.415128
Target:  5'- aCGgCCCCUCgcgcaUUGGCCCGCGGGu -3'
miRNA:   3'- -GCgGGGGGGaccagGACCGGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 30844 0.71 0.228079
Target:  5'- gGCCCCCgCgCUGcUUCUGGgCCGCGGGg -3'
miRNA:   3'- gCGGGGG-G-GACcAGGACCgGGCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.