miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5555 3' -66.5 NC_001806.1 + 150227 0.66 0.445133
Target:  5'- uGCCCCuCCCgccgacgcaacagGGgCUUGGCCUGCGu- -3'
miRNA:   3'- gCGGGG-GGGa------------CCaGGACCGGGCGUcu -5'
5555 3' -66.5 NC_001806.1 + 148944 0.67 0.391094
Target:  5'- cCGCCCCCCCacuucGGUCUccGCCU-CAGAg -3'
miRNA:   3'- -GCGGGGGGGa----CCAGGacCGGGcGUCU- -5'
5555 3' -66.5 NC_001806.1 + 148835 0.66 0.457125
Target:  5'- cCGCCCCCCCauccacGcCCUgcGGCCCcaGCAGc -3'
miRNA:   3'- -GCGGGGGGGac----CaGGA--CCGGG--CGUCu -5'
5555 3' -66.5 NC_001806.1 + 148436 0.74 0.13264
Target:  5'- uGCCCCCCCagGGUCa-GGUaCCGCGGGg -3'
miRNA:   3'- gCGGGGGGGa-CCAGgaCCG-GGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 147325 0.66 0.448541
Target:  5'- gCGCCCCCCC-GGcCCUGaGUCgGaGGGg -3'
miRNA:   3'- -GCGGGGGGGaCCaGGAC-CGGgCgUCU- -5'
5555 3' -66.5 NC_001806.1 + 144957 0.67 0.367986
Target:  5'- cCGgCCCCCgUGGcggCCcGGCCCGgGGc -3'
miRNA:   3'- -GCgGGGGGgACCa--GGaCCGGGCgUCu -5'
5555 3' -66.5 NC_001806.1 + 144824 0.67 0.375584
Target:  5'- gGCCCCCgaCCgcggcGGUCCgGGCCCcgucCGGAc -3'
miRNA:   3'- gCGGGGG--GGa----CCAGGaCCGGGc---GUCU- -5'
5555 3' -66.5 NC_001806.1 + 143967 0.67 0.367986
Target:  5'- cCGCCCCugCCCcGGcgaccCCcGGCCCGCAcGAu -3'
miRNA:   3'- -GCGGGG--GGGaCCa----GGaCCGGGCGU-CU- -5'
5555 3' -66.5 NC_001806.1 + 135791 1.07 0.000453
Target:  5'- cCGCCCCCCCUGGUCCUGGCCCGCAGAc -3'
miRNA:   3'- -GCGGGGGGGACCAGGACCGGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 135005 0.71 0.21788
Target:  5'- uGCCCCcgCCCUGGUCC-GGCgCGCc-- -3'
miRNA:   3'- gCGGGG--GGGACCAGGaCCGgGCGucu -5'
5555 3' -66.5 NC_001806.1 + 132675 0.8 0.047793
Target:  5'- aCGCCgCgCUCCUGGgggCCUGGCCCGCGGu -3'
miRNA:   3'- -GCGG-G-GGGGACCa--GGACCGGGCGUCu -5'
5555 3' -66.5 NC_001806.1 + 132501 0.72 0.189602
Target:  5'- aCGCCgCCCCCggGGcCCUGGCCCcCGu- -3'
miRNA:   3'- -GCGG-GGGGGa-CCaGGACCGGGcGUcu -5'
5555 3' -66.5 NC_001806.1 + 131556 0.66 0.465796
Target:  5'- cCGCCCCCCCcccgucaccGGUuuccgcgacccaCCgGGCCCGgcCAGGc -3'
miRNA:   3'- -GCGGGGGGGa--------CCA------------GGaCCGGGC--GUCU- -5'
5555 3' -66.5 NC_001806.1 + 131369 0.69 0.279041
Target:  5'- aGCUCCCCaccgaGG-CCUGGCCCaugauGCAGGg -3'
miRNA:   3'- gCGGGGGGga---CCaGGACCGGG-----CGUCU- -5'
5555 3' -66.5 NC_001806.1 + 129665 0.66 0.448541
Target:  5'- gCGCCCgCCCgGGccgCCgagcGGCCCGUcuccGGAc -3'
miRNA:   3'- -GCGGGgGGGaCCa--GGa---CCGGGCG----UCU- -5'
5555 3' -66.5 NC_001806.1 + 128366 0.66 0.440048
Target:  5'- gGaCCCCCCUGGUgCaaaaaUGGgCCGCAa- -3'
miRNA:   3'- gCgGGGGGGACCAgG-----ACCgGGCGUcu -5'
5555 3' -66.5 NC_001806.1 + 125722 0.73 0.153244
Target:  5'- gCGCCCCUCUggccaucGGUCCccucUGGCCCGCcuGGAu -3'
miRNA:   3'- -GCGGGGGGGa------CCAGG----ACCGGGCG--UCU- -5'
5555 3' -66.5 NC_001806.1 + 125124 0.71 0.228079
Target:  5'- aGCCUCUCCUGGUgCUGGuguCCCGCc-- -3'
miRNA:   3'- gCGGGGGGGACCAgGACC---GGGCGucu -5'
5555 3' -66.5 NC_001806.1 + 123192 0.72 0.176709
Target:  5'- aGCaCCCCCCgGGUC---GCCCGCAGGg -3'
miRNA:   3'- gCG-GGGGGGaCCAGgacCGGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 118121 0.69 0.297937
Target:  5'- uCGCCgguCUCCCUGG-CCUGGCCC-CcGAu -3'
miRNA:   3'- -GCGG---GGGGGACCaGGACCGGGcGuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.