miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5555 3' -66.5 NC_001806.1 + 32957 0.66 0.415128
Target:  5'- gGCCCcgggccggggCCCCUugGGUCCgccggGGCCC-CGGGc -3'
miRNA:   3'- gCGGG----------GGGGA--CCAGGa----CCGGGcGUCU- -5'
5555 3' -66.5 NC_001806.1 + 37587 0.66 0.445984
Target:  5'- gGCCCUCCUUGGcCCgccagcaccggGGCCCaggggcuauucgcgGCGGGa -3'
miRNA:   3'- gCGGGGGGGACCaGGa----------CCGGG--------------CGUCU- -5'
5555 3' -66.5 NC_001806.1 + 45227 0.69 0.297937
Target:  5'- gGCCCCCCCagaagGGUCUgucgggcgGGCCUGUu-- -3'
miRNA:   3'- gCGGGGGGGa----CCAGGa-------CCGGGCGucu -5'
5555 3' -66.5 NC_001806.1 + 47193 0.66 0.465796
Target:  5'- cCGCCCCCCCg---CCcGGCCgGgGGu -3'
miRNA:   3'- -GCGGGGGGGaccaGGaCCGGgCgUCu -5'
5555 3' -66.5 NC_001806.1 + 49429 0.68 0.35311
Target:  5'- gGUUCCCCgC-GGUCCUccgcaGGCCCgGCAGGg -3'
miRNA:   3'- gCGGGGGG-GaCCAGGA-----CCGGG-CGUCU- -5'
5555 3' -66.5 NC_001806.1 + 51013 0.76 0.1039
Target:  5'- cCGCCCCCgUaagcggcgGGUCCguguugGGCCCGCGGGu -3'
miRNA:   3'- -GCGGGGGgGa-------CCAGGa-----CCGGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 52561 0.66 0.440048
Target:  5'- gGCCUCCCCcggacgacaUGG-CCagcGGCCCGgGGGg -3'
miRNA:   3'- gCGGGGGGG---------ACCaGGa--CCGGGCgUCU- -5'
5555 3' -66.5 NC_001806.1 + 52893 0.68 0.345833
Target:  5'- uGCCCCUCCUcGUCC-GGCgCGCGu- -3'
miRNA:   3'- gCGGGGGGGAcCAGGaCCGgGCGUcu -5'
5555 3' -66.5 NC_001806.1 + 57348 0.66 0.448541
Target:  5'- uCGaCCCgUCCCUGGccgUCCUccggggacacGGCCCGguGGc -3'
miRNA:   3'- -GC-GGG-GGGGACC---AGGA----------CCGGGCguCU- -5'
5555 3' -66.5 NC_001806.1 + 57901 0.72 0.198651
Target:  5'- gCGCCCCCgCUUGGUCgUGGgagugaCCCGCGu- -3'
miRNA:   3'- -GCGGGGG-GGACCAGgACC------GGGCGUcu -5'
5555 3' -66.5 NC_001806.1 + 63918 0.66 0.445133
Target:  5'- uGCCCCCguugcgggcgaggaUggcacugacguugCUGGUgaUGGCCCGCAGGg -3'
miRNA:   3'- gCGGGGG--------------G-------------GACCAggACCGGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 64435 0.69 0.272958
Target:  5'- gGCCUCCCg-GGUCC-GGaUCCGCAGGu -3'
miRNA:   3'- gCGGGGGGgaCCAGGaCC-GGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 64859 0.69 0.311077
Target:  5'- aGCCCCUCCgcgcGUCCcgGGCCacgGCGGGa -3'
miRNA:   3'- gCGGGGGGGac--CAGGa-CCGGg--CGUCU- -5'
5555 3' -66.5 NC_001806.1 + 65457 0.71 0.228079
Target:  5'- uGCCgcggCCCCCgGGUCCUGggggcGCCCGCGc- -3'
miRNA:   3'- gCGG----GGGGGaCCAGGAC-----CGGGCGUcu -5'
5555 3' -66.5 NC_001806.1 + 66436 0.66 0.448541
Target:  5'- gCGCCCCCgCaGGUCC-GGCUgccaGCGGu -3'
miRNA:   3'- -GCGGGGGgGaCCAGGaCCGGg---CGUCu -5'
5555 3' -66.5 NC_001806.1 + 67367 0.69 0.29153
Target:  5'- cCGCCCCCCCgcgcaUGGUgC---CCCGCAGGa -3'
miRNA:   3'- -GCGGGGGGG-----ACCAgGaccGGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 67490 0.66 0.445133
Target:  5'- cCGCCcuccggggucccgaCCCCCUGGggagcCCUGGgCCGUcgcggcgAGAg -3'
miRNA:   3'- -GCGG--------------GGGGGACCa----GGACCgGGCG-------UCU- -5'
5555 3' -66.5 NC_001806.1 + 69876 0.72 0.185215
Target:  5'- aCGCCCCCUCUGuccaCCUGGC-CGCGGc -3'
miRNA:   3'- -GCGGGGGGGACca--GGACCGgGCGUCu -5'
5555 3' -66.5 NC_001806.1 + 69966 0.66 0.448541
Target:  5'- uCGUCCCCUac-GUUCUGGCCCuGguGGu -3'
miRNA:   3'- -GCGGGGGGgacCAGGACCGGG-CguCU- -5'
5555 3' -66.5 NC_001806.1 + 70502 0.68 0.331604
Target:  5'- aCGCCCgaCCgCCUGGggcCCUGGCCCcCcGAg -3'
miRNA:   3'- -GCGGG--GG-GGACCa--GGACCGGGcGuCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.