miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5555 3' -66.5 NC_001806.1 + 22909 0.69 0.279041
Target:  5'- aGCCCCCCgC-GG-CCggagGGaCCCGCGGGc -3'
miRNA:   3'- gCGGGGGG-GaCCaGGa---CC-GGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 131369 0.69 0.279041
Target:  5'- aGCUCCCCaccgaGG-CCUGGCCCaugauGCAGGg -3'
miRNA:   3'- gCGGGGGGga---CCaGGACCGGG-----CGUCU- -5'
5555 3' -66.5 NC_001806.1 + 5850 0.69 0.29153
Target:  5'- gGCCCCCC--GGUCCc-GCCCGcCGGAc -3'
miRNA:   3'- gCGGGGGGgaCCAGGacCGGGC-GUCU- -5'
5555 3' -66.5 NC_001806.1 + 67367 0.69 0.29153
Target:  5'- cCGCCCCCCCgcgcaUGGUgC---CCCGCAGGa -3'
miRNA:   3'- -GCGGGGGGG-----ACCAgGaccGGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 45227 0.69 0.297937
Target:  5'- gGCCCCCCCagaagGGUCUgucgggcgGGCCUGUu-- -3'
miRNA:   3'- gCGGGGGGGa----CCAGGa-------CCGGGCGucu -5'
5555 3' -66.5 NC_001806.1 + 118121 0.69 0.297937
Target:  5'- uCGCCgguCUCCCUGG-CCUGGCCC-CcGAu -3'
miRNA:   3'- -GCGG---GGGGGACCaGGACCGGGcGuCU- -5'
5555 3' -66.5 NC_001806.1 + 1237 0.69 0.311077
Target:  5'- gCGCCCCgCCCc-GUCCcGGCCCGUu-- -3'
miRNA:   3'- -GCGGGG-GGGacCAGGaCCGGGCGucu -5'
5555 3' -66.5 NC_001806.1 + 64859 0.69 0.311077
Target:  5'- aGCCCCUCCgcgcGUCCcgGGCCacgGCGGGa -3'
miRNA:   3'- gCGGGGGGGac--CAGGa-CCGGg--CGUCU- -5'
5555 3' -66.5 NC_001806.1 + 70502 0.68 0.331604
Target:  5'- aCGCCCgaCCgCCUGGggcCCUGGCCCcCcGAg -3'
miRNA:   3'- -GCGGG--GG-GGACCa--GGACCGGGcGuCU- -5'
5555 3' -66.5 NC_001806.1 + 73983 0.68 0.331604
Target:  5'- uGCCCgCCCC-GG-CCggggcGGcCCCGCAGGg -3'
miRNA:   3'- gCGGG-GGGGaCCaGGa----CC-GGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 85731 0.68 0.338664
Target:  5'- cCGCCCCgaaCCCUgcGGUCCgGaGCCgCGCGGc -3'
miRNA:   3'- -GCGGGG---GGGA--CCAGGaC-CGG-GCGUCu -5'
5555 3' -66.5 NC_001806.1 + 52893 0.68 0.345833
Target:  5'- uGCCCCUCCUcGUCC-GGCgCGCGu- -3'
miRNA:   3'- gCGGGGGGGAcCAGGaCCGgGCGUcu -5'
5555 3' -66.5 NC_001806.1 + 20301 0.68 0.345833
Target:  5'- cCGCCCCCUUggggcGGUCCc-GCCCGCcGGc -3'
miRNA:   3'- -GCGGGGGGGa----CCAGGacCGGGCGuCU- -5'
5555 3' -66.5 NC_001806.1 + 111474 0.68 0.345833
Target:  5'- aGCaUCCCCCgccuuuuugGGUCCgGGCCCGUc-- -3'
miRNA:   3'- gCG-GGGGGGa--------CCAGGaCCGGGCGucu -5'
5555 3' -66.5 NC_001806.1 + 49429 0.68 0.35311
Target:  5'- gGUUCCCCgC-GGUCCUccgcaGGCCCgGCAGGg -3'
miRNA:   3'- gCGGGGGG-GaCCAGGA-----CCGGG-CGUCU- -5'
5555 3' -66.5 NC_001806.1 + 2315 0.67 0.360494
Target:  5'- gGCCCCgCCgccggccaGGUCCUcGCCCgGCAGc -3'
miRNA:   3'- gCGGGGgGGa-------CCAGGAcCGGG-CGUCu -5'
5555 3' -66.5 NC_001806.1 + 81886 0.67 0.360494
Target:  5'- cCGUCCCCCCUGG-CCcGGaaaCCCGUu-- -3'
miRNA:   3'- -GCGGGGGGGACCaGGaCC---GGGCGucu -5'
5555 3' -66.5 NC_001806.1 + 83240 0.67 0.360494
Target:  5'- cCGCCCCCUCaag----GGCCCGCGGGg -3'
miRNA:   3'- -GCGGGGGGGaccaggaCCGGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 114576 0.67 0.367986
Target:  5'- aGgUCCCCCUGGUCCccccGGCuCUGgGGGc -3'
miRNA:   3'- gCgGGGGGGACCAGGa---CCG-GGCgUCU- -5'
5555 3' -66.5 NC_001806.1 + 144957 0.67 0.367986
Target:  5'- cCGgCCCCCgUGGcggCCcGGCCCGgGGc -3'
miRNA:   3'- -GCgGGGGGgACCa--GGaCCGGGCgUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.