miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5555 3' -66.5 NC_001806.1 + 26407 0.66 0.431646
Target:  5'- cCGCCgCCCCC-GG-CCgcccgGGCCCaCGGGc -3'
miRNA:   3'- -GCGG-GGGGGaCCaGGa----CCGGGcGUCU- -5'
5555 3' -66.5 NC_001806.1 + 23493 0.66 0.431646
Target:  5'- cCGCgCCCCgUGG-CCgugucgcgccGGCCCGCcGAg -3'
miRNA:   3'- -GCGgGGGGgACCaGGa---------CCGGGCGuCU- -5'
5555 3' -66.5 NC_001806.1 + 73290 0.66 0.431646
Target:  5'- uGCUCCgCCgc--CCUGGCCCGCgAGGu -3'
miRNA:   3'- gCGGGGgGGaccaGGACCGGGCG-UCU- -5'
5555 3' -66.5 NC_001806.1 + 20159 0.66 0.431646
Target:  5'- cCGCCCCCCgccGcCCgGGCCCGCccccGGGg -3'
miRNA:   3'- -GCGGGGGGgacCaGGaCCGGGCG----UCU- -5'
5555 3' -66.5 NC_001806.1 + 27600 0.66 0.415128
Target:  5'- aCGgCCCCUCgcgcaUUGGCCCGCGGGu -3'
miRNA:   3'- -GCgGGGGGGaccagGACCGGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 90255 0.66 0.415128
Target:  5'- uCGCCguggcgCCCCUGGUCgUGGgccugaCCGUGGAg -3'
miRNA:   3'- -GCGGg-----GGGGACCAGgACCg-----GGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 32957 0.66 0.415128
Target:  5'- gGCCCcgggccggggCCCCUugGGUCCgccggGGCCC-CGGGc -3'
miRNA:   3'- gCGGG----------GGGGA--CCAGGa----CCGGGcGUCU- -5'
5555 3' -66.5 NC_001806.1 + 89260 0.67 0.407016
Target:  5'- gGUCCCCggCUGGcUCCgcgagGGCCgGCGGGc -3'
miRNA:   3'- gCGGGGGg-GACC-AGGa----CCGGgCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 93863 0.67 0.399004
Target:  5'- cCGCCgaCUCCCggcuugccGGUCggcgGGCCCGCGGGa -3'
miRNA:   3'- -GCGG--GGGGGa-------CCAGga--CCGGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 87089 0.67 0.394246
Target:  5'- uCGCCCCCCCaccucgaucuccaggUaGUCCUuGCCCGCc-- -3'
miRNA:   3'- -GCGGGGGGG---------------AcCAGGAcCGGGCGucu -5'
5555 3' -66.5 NC_001806.1 + 26958 0.67 0.391094
Target:  5'- gGCCgCCCgCCUGGcgcgCCgcggcucgugGGCCCGCGa- -3'
miRNA:   3'- gCGG-GGG-GGACCa---GGa---------CCGGGCGUcu -5'
5555 3' -66.5 NC_001806.1 + 105767 0.67 0.391094
Target:  5'- gGUCCCCCauggggaaUGGUUUUGGUUCGUGGGg -3'
miRNA:   3'- gCGGGGGGg-------ACCAGGACCGGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 148944 0.67 0.391094
Target:  5'- cCGCCCCCCCacuucGGUCUccGCCU-CAGAg -3'
miRNA:   3'- -GCGGGGGGGa----CCAGGacCGGGcGUCU- -5'
5555 3' -66.5 NC_001806.1 + 24762 0.67 0.384063
Target:  5'- aCGCCCCCCCgcUGGUgcugcgcggcgacgaCgacGGCCCGgGGGc -3'
miRNA:   3'- -GCGGGGGGG--ACCAg--------------Ga--CCGGGCgUCU- -5'
5555 3' -66.5 NC_001806.1 + 74935 0.67 0.383287
Target:  5'- gCGCCCCCUgaGGUUacggcGGCgCUGCGGGc -3'
miRNA:   3'- -GCGGGGGGgaCCAGga---CCG-GGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 74358 0.67 0.383287
Target:  5'- aCGCCCCCgaggaCCUGGcggCCUGGCucuCCGUccuGAc -3'
miRNA:   3'- -GCGGGGG-----GGACCa--GGACCG---GGCGu--CU- -5'
5555 3' -66.5 NC_001806.1 + 98161 0.67 0.383287
Target:  5'- aGCCgCCCCCUGGUCagcuuucgguaCgaagaccagGGCCCGUuGGu -3'
miRNA:   3'- gCGG-GGGGGACCAG-----------Ga--------CCGGGCGuCU- -5'
5555 3' -66.5 NC_001806.1 + 144824 0.67 0.375584
Target:  5'- gGCCCCCgaCCgcggcGGUCCgGGCCCcgucCGGAc -3'
miRNA:   3'- gCGGGGG--GGa----CCAGGaCCGGGc---GUCU- -5'
5555 3' -66.5 NC_001806.1 + 113305 0.67 0.367986
Target:  5'- aCGUUCCCCC-GG-CC-GGCCCGgGGGa -3'
miRNA:   3'- -GCGGGGGGGaCCaGGaCCGGGCgUCU- -5'
5555 3' -66.5 NC_001806.1 + 114576 0.67 0.367986
Target:  5'- aGgUCCCCCUGGUCCccccGGCuCUGgGGGc -3'
miRNA:   3'- gCgGGGGGGACCAGGa---CCG-GGCgUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.