miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5555 3' -66.5 NC_001806.1 + 75288 0.66 0.454541
Target:  5'- gGCcuCCCCCCUGGccuUCCUagcGGCcauggccgacagcgCCGCGGGa -3'
miRNA:   3'- gCG--GGGGGGACC---AGGA---CCG--------------GGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 26670 0.66 0.448541
Target:  5'- cCGCCgCCCCCcGGcCCcGGCCCcCAc- -3'
miRNA:   3'- -GCGG-GGGGGaCCaGGaCCGGGcGUcu -5'
5555 3' -66.5 NC_001806.1 + 147325 0.66 0.448541
Target:  5'- gCGCCCCCCC-GGcCCUGaGUCgGaGGGg -3'
miRNA:   3'- -GCGGGGGGGaCCaGGAC-CGGgCgUCU- -5'
5555 3' -66.5 NC_001806.1 + 69966 0.66 0.448541
Target:  5'- uCGUCCCCUac-GUUCUGGCCCuGguGGu -3'
miRNA:   3'- -GCGGGGGGgacCAGGACCGGG-CguCU- -5'
5555 3' -66.5 NC_001806.1 + 66436 0.66 0.448541
Target:  5'- gCGCCCCCgCaGGUCC-GGCUgccaGCGGu -3'
miRNA:   3'- -GCGGGGGgGaCCAGGaCCGGg---CGUCu -5'
5555 3' -66.5 NC_001806.1 + 129665 0.66 0.448541
Target:  5'- gCGCCCgCCCgGGccgCCgagcGGCCCGUcuccGGAc -3'
miRNA:   3'- -GCGGGgGGGaCCa--GGa---CCGGGCG----UCU- -5'
5555 3' -66.5 NC_001806.1 + 57348 0.66 0.448541
Target:  5'- uCGaCCCgUCCCUGGccgUCCUccggggacacGGCCCGguGGc -3'
miRNA:   3'- -GC-GGG-GGGGACC---AGGA----------CCGGGCguCU- -5'
5555 3' -66.5 NC_001806.1 + 143967 0.67 0.367986
Target:  5'- cCGCCCCugCCCcGGcgaccCCcGGCCCGCAcGAu -3'
miRNA:   3'- -GCGGGG--GGGaCCa----GGaCCGGGCGU-CU- -5'
5555 3' -66.5 NC_001806.1 + 144824 0.67 0.375584
Target:  5'- gGCCCCCgaCCgcggcGGUCCgGGCCCcgucCGGAc -3'
miRNA:   3'- gCGGGGG--GGa----CCAGGaCCGGGc---GUCU- -5'
5555 3' -66.5 NC_001806.1 + 98161 0.67 0.383287
Target:  5'- aGCCgCCCCCUGGUCagcuuucgguaCgaagaccagGGCCCGUuGGu -3'
miRNA:   3'- gCGG-GGGGGACCAG-----------Ga--------CCGGGCGuCU- -5'
5555 3' -66.5 NC_001806.1 + 74358 0.67 0.383287
Target:  5'- aCGCCCCCgaggaCCUGGcggCCUGGCucuCCGUccuGAc -3'
miRNA:   3'- -GCGGGGG-----GGACCa--GGACCG---GGCGu--CU- -5'
5555 3' -66.5 NC_001806.1 + 74935 0.67 0.383287
Target:  5'- gCGCCCCCUgaGGUUacggcGGCgCUGCGGGc -3'
miRNA:   3'- -GCGGGGGGgaCCAGga---CCG-GGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 24762 0.67 0.384063
Target:  5'- aCGCCCCCCCgcUGGUgcugcgcggcgacgaCgacGGCCCGgGGGc -3'
miRNA:   3'- -GCGGGGGGG--ACCAg--------------Ga--CCGGGCgUCU- -5'
5555 3' -66.5 NC_001806.1 + 26958 0.67 0.391094
Target:  5'- gGCCgCCCgCCUGGcgcgCCgcggcucgugGGCCCGCGa- -3'
miRNA:   3'- gCGG-GGG-GGACCa---GGa---------CCGGGCGUcu -5'
5555 3' -66.5 NC_001806.1 + 105767 0.67 0.391094
Target:  5'- gGUCCCCCauggggaaUGGUUUUGGUUCGUGGGg -3'
miRNA:   3'- gCGGGGGGg-------ACCAGGACCGGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 148944 0.67 0.391094
Target:  5'- cCGCCCCCCCacuucGGUCUccGCCU-CAGAg -3'
miRNA:   3'- -GCGGGGGGGa----CCAGGacCGGGcGUCU- -5'
5555 3' -66.5 NC_001806.1 + 87089 0.67 0.394246
Target:  5'- uCGCCCCCCCaccucgaucuccaggUaGUCCUuGCCCGCc-- -3'
miRNA:   3'- -GCGGGGGGG---------------AcCAGGAcCGGGCGucu -5'
5555 3' -66.5 NC_001806.1 + 93863 0.67 0.399004
Target:  5'- cCGCCgaCUCCCggcuugccGGUCggcgGGCCCGCGGGa -3'
miRNA:   3'- -GCGG--GGGGGa-------CCAGga--CCGGGCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 89260 0.67 0.407016
Target:  5'- gGUCCCCggCUGGcUCCgcgagGGCCgGCGGGc -3'
miRNA:   3'- gCGGGGGg-GACC-AGGa----CCGGgCGUCU- -5'
5555 3' -66.5 NC_001806.1 + 144957 0.67 0.367986
Target:  5'- cCGgCCCCCgUGGcggCCcGGCCCGgGGc -3'
miRNA:   3'- -GCgGGGGGgACCa--GGaCCGGGCgUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.