miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5556 3' -56.7 NC_001806.1 + 22992 0.66 0.897224
Target:  5'- -cGCGAGCUGCGguucgugcgcgacgcGCUGGUGCUCAuGCg -3'
miRNA:   3'- cuUGCUUGGCGU---------------UGGCCGUGGGUcCG- -5'
5556 3' -56.7 NC_001806.1 + 95708 0.66 0.894619
Target:  5'- cGAC-AACCGC--UCGGCG-CCGGGCg -3'
miRNA:   3'- cUUGcUUGGCGuuGGCCGUgGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 22418 0.66 0.894619
Target:  5'- uGGCGGccgGCCGCuucgGCUGGgGCCUGGcGCa -3'
miRNA:   3'- cUUGCU---UGGCGu---UGGCCgUGGGUC-CG- -5'
5556 3' -56.7 NC_001806.1 + 131486 0.66 0.894619
Target:  5'- gGAACGcACCGaggggccaAGuuGGCccccggACCCGGGCc -3'
miRNA:   3'- -CUUGCuUGGCg-------UUggCCG------UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 1753 0.66 0.893962
Target:  5'- cGGCGGuACuCGCGcggggacaugggcACCGGCGugUCCGGGCc -3'
miRNA:   3'- cUUGCU-UG-GCGU-------------UGGCCGU--GGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 47683 0.66 0.893962
Target:  5'- -uGCGcGCCaGCGuCCGGCAgcugcacCgCCAGGCg -3'
miRNA:   3'- cuUGCuUGG-CGUuGGCCGU-------G-GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 1528 0.66 0.893304
Target:  5'- cGGGCGcaaaagucccuCCGCGGCCcGCGCcaCCGGGCc -3'
miRNA:   3'- -CUUGCuu---------GGCGUUGGcCGUG--GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 132659 0.66 0.88795
Target:  5'- ---gGGGCCGCGGCCGcuuacgccGCGCUCcuggGGGCc -3'
miRNA:   3'- cuugCUUGGCGUUGGC--------CGUGGG----UCCG- -5'
5556 3' -56.7 NC_001806.1 + 2230 0.66 0.88795
Target:  5'- --cCGGcCCGCAcaGCCGGUugGCCaGGGCc -3'
miRNA:   3'- cuuGCUuGGCGU--UGGCCG--UGGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 109660 0.66 0.88795
Target:  5'- --cCGcACgCGCAGcCCGGauauuagcaCACCCGGGCu -3'
miRNA:   3'- cuuGCuUG-GCGUU-GGCC---------GUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 151146 0.66 0.88795
Target:  5'- -cGCGcgUCGCAggcGCaGGCGCgCCAGGUg -3'
miRNA:   3'- cuUGCuuGGCGU---UGgCCGUG-GGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 33591 0.66 0.88795
Target:  5'- -cGCGGGCaCGCGcgcccuuaauggACCGGCG-CgGGGCg -3'
miRNA:   3'- cuUGCUUG-GCGU------------UGGCCGUgGgUCCG- -5'
5556 3' -56.7 NC_001806.1 + 108504 0.66 0.88795
Target:  5'- aGACGAACgGUAAgaagcacauCCaGGUACCC-GGCg -3'
miRNA:   3'- cUUGCUUGgCGUU---------GG-CCGUGGGuCCG- -5'
5556 3' -56.7 NC_001806.1 + 31102 0.66 0.887271
Target:  5'- -uGCGGGCCGCGguccccggcuggaGCCGccGCACCCu-GCu -3'
miRNA:   3'- cuUGCUUGGCGU-------------UGGC--CGUGGGucCG- -5'
5556 3' -56.7 NC_001806.1 + 24710 0.66 0.887271
Target:  5'- -cGCGGGCCGCGgagggacuuuugcGCCcGCGCCCugcuGGa -3'
miRNA:   3'- cuUGCUUGGCGU-------------UGGcCGUGGGu---CCg -5'
5556 3' -56.7 NC_001806.1 + 23285 0.66 0.883842
Target:  5'- gGGGCGcAAgCGCAAgagucccggcccggcCCGGcCGCCCggAGGCg -3'
miRNA:   3'- -CUUGC-UUgGCGUU---------------GGCC-GUGGG--UCCG- -5'
5556 3' -56.7 NC_001806.1 + 97780 0.66 0.883842
Target:  5'- cGAGCaGAGCCGCAagcccccaaacccacGCCcccGcCGCCCGGGg -3'
miRNA:   3'- -CUUG-CUUGGCGU---------------UGGc--C-GUGGGUCCg -5'
5556 3' -56.7 NC_001806.1 + 77770 0.66 0.881059
Target:  5'- cAACcGGCUuCAGCUGGCccucagcgacGCCCAGGCc -3'
miRNA:   3'- cUUGcUUGGcGUUGGCCG----------UGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 51553 0.66 0.881059
Target:  5'- -uACGAGuacauCCGgcacuacgcuuCGGCCGcCACCCAGGCg -3'
miRNA:   3'- cuUGCUU-----GGC-----------GUUGGCcGUGGGUCCG- -5'
5556 3' -56.7 NC_001806.1 + 56838 0.66 0.881059
Target:  5'- cAACaccGCCGCGGCCagGGCGgCCGcGGCg -3'
miRNA:   3'- cUUGcu-UGGCGUUGG--CCGUgGGU-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.