Results 21 - 40 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5558 | 3' | -50.8 | NC_001806.1 | + | 19358 | 0.7 | 0.946356 |
Target: 5'- cUCCGGGgggcccuacGGCCACCGAU--GCgGGGGGc -3' miRNA: 3'- -AGGCUU---------UCGGUGGUUAucUGgUCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 150683 | 0.7 | 0.941724 |
Target: 5'- gCUGgcGGCCGCCGAUGG-CCAgucccgcccccGAGGc -3' miRNA: 3'- aGGCuuUCGGUGGUUAUCuGGU-----------CUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 81603 | 0.73 | 0.833919 |
Target: 5'- -gCGGGacGGCCAUCG--GGACCGGAGGu -3' miRNA: 3'- agGCUU--UCGGUGGUuaUCUGGUCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 83721 | 0.74 | 0.816411 |
Target: 5'- cCCGGGAGCCGCCAA-GGugCAGu-- -3' miRNA: 3'- aGGCUUUCGGUGGUUaUCugGUCucc -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 33983 | 0.74 | 0.807386 |
Target: 5'- gCCGggGGUCGCCGGggcaGGGgCGGGGGc -3' miRNA: 3'- aGGCuuUCGGUGGUUa---UCUgGUCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 147823 | 0.74 | 0.798191 |
Target: 5'- gCgGggGGCCugUGGggagAGGCCGGGGGg -3' miRNA: 3'- aGgCuuUCGGugGUUa---UCUGGUCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 75434 | 0.74 | 0.788836 |
Target: 5'- gCCG--GGCCGCCAAccaACCGGAGGg -3' miRNA: 3'- aGGCuuUCGGUGGUUaucUGGUCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 147278 | 0.76 | 0.667708 |
Target: 5'- -gCGGAGGCCGCCGA-GGACguCAGGGGg -3' miRNA: 3'- agGCUUUCGGUGGUUaUCUG--GUCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 9101 | 0.77 | 0.64663 |
Target: 5'- cCCG-GAGCCACCGAgcGGCCAGccAGGc -3' miRNA: 3'- aGGCuUUCGGUGGUUauCUGGUC--UCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 49573 | 0.78 | 0.59387 |
Target: 5'- cCCGGAAGCCGUC---GGGCCGGAGGa -3' miRNA: 3'- aGGCUUUCGGUGGuuaUCUGGUCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 84226 | 0.73 | 0.839021 |
Target: 5'- cUCUGAuGGCCACCGugcugaaacacGGCCGGGGGc -3' miRNA: 3'- -AGGCUuUCGGUGGUuau--------CUGGUCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 3829 | 0.73 | 0.858694 |
Target: 5'- gCCGAAgcggccGGCCGCCAuggcGUAGcCCAGGuGGg -3' miRNA: 3'- aGGCUU------UCGGUGGU----UAUCuGGUCU-CC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 130492 | 0.7 | 0.941724 |
Target: 5'- gCCGGcccAGGCCGCCG--AGA-CGGAGGa -3' miRNA: 3'- aGGCU---UUCGGUGGUuaUCUgGUCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 76530 | 0.7 | 0.929576 |
Target: 5'- gCCG-AAGCCACCGAgcgggucacggcgGGGCUgcgGGAGGu -3' miRNA: 3'- aGGCuUUCGGUGGUUa------------UCUGG---UCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 31883 | 0.71 | 0.924642 |
Target: 5'- cCCGGAcugaccuggccucuGGCCGCCAcaaaGGGCgGGGGGg -3' miRNA: 3'- aGGCUU--------------UCGGUGGUua--UCUGgUCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 129694 | 0.71 | 0.914761 |
Target: 5'- cUCCGGAcGCCucuCCGGaGGcCCGGGGGg -3' miRNA: 3'- -AGGCUUuCGGu--GGUUaUCuGGUCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 88360 | 0.71 | 0.914761 |
Target: 5'- cCCGAAGGCCAUCG--GGGCCGccGGc -3' miRNA: 3'- aGGCUUUCGGUGGUuaUCUGGUcuCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 2697 | 0.72 | 0.895548 |
Target: 5'- cCCGggGgcugccGCCGCCAGccGcCCAGGGGg -3' miRNA: 3'- aGGCuuU------CGGUGGUUauCuGGUCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 64942 | 0.72 | 0.895548 |
Target: 5'- gCUGAGGGaCCACCGgcGUcggcgcccGGGCCGGGGGu -3' miRNA: 3'- aGGCUUUC-GGUGGU--UA--------UCUGGUCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 65856 | 0.72 | 0.881509 |
Target: 5'- aCCGAGAGCCAaaaagAGUAGGCgAGAGc -3' miRNA: 3'- aGGCUUUCGGUgg---UUAUCUGgUCUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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