miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5558 3' -50.8 NC_001806.1 + 27349 0.66 0.99446
Target:  5'- -gCGGGAGUUACCGcccaAUGGGCCGGGc- -3'
miRNA:   3'- agGCUUUCGGUGGU----UAUCUGGUCUcc -5'
5558 3' -50.8 NC_001806.1 + 127696 0.66 0.99446
Target:  5'- gUCGAGcuGGCCGCCGuaugAGAUCgcguAGGGGu -3'
miRNA:   3'- aGGCUU--UCGGUGGUua--UCUGG----UCUCC- -5'
5558 3' -50.8 NC_001806.1 + 41739 0.66 0.993582
Target:  5'- -aCGcgGGCCACCcgcgggGGACCAGGa- -3'
miRNA:   3'- agGCuuUCGGUGGuua---UCUGGUCUcc -5'
5558 3' -50.8 NC_001806.1 + 102039 0.66 0.995239
Target:  5'- cUCCGcucuugauGGCCcCCGAgucGGAcCCGGAGGc -3'
miRNA:   3'- -AGGCuu------UCGGuGGUUa--UCU-GGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 31800 0.66 0.99446
Target:  5'- cCCGAAAGCauccuGCCAcuggcAUGGAgCCAGAa- -3'
miRNA:   3'- aGGCUUUCGg----UGGU-----UAUCU-GGUCUcc -5'
5558 3' -50.8 NC_001806.1 + 28157 0.66 0.993489
Target:  5'- cCUGAGGGCCGCCcccagcgcgagguGAgGGGCCGGGc- -3'
miRNA:   3'- aGGCUUUCGGUGG-------------UUaUCUGGUCUcc -5'
5558 3' -50.8 NC_001806.1 + 144795 0.66 0.993582
Target:  5'- -gCGAAGGCCGCguAcggcccgGGACgAGGGGc -3'
miRNA:   3'- agGCUUUCGGUGguUa------UCUGgUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 65420 0.66 0.995239
Target:  5'- cUCCGAuguuuGUCACCGcaacgaagGGAgCGGGGGa -3'
miRNA:   3'- -AGGCUuu---CGGUGGUua------UCUgGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 117699 0.66 0.99446
Target:  5'- cCCGAGcccgcgucGGCCcCCuccgAGGCCAGuAGGc -3'
miRNA:   3'- aGGCUU--------UCGGuGGuua-UCUGGUC-UCC- -5'
5558 3' -50.8 NC_001806.1 + 84448 0.67 0.990264
Target:  5'- gCCGGuuuguGAGCCugcuucggGCCGcgGGGCCcGAGGc -3'
miRNA:   3'- aGGCU-----UUCGG--------UGGUuaUCUGGuCUCC- -5'
5558 3' -50.8 NC_001806.1 + 56161 0.67 0.983904
Target:  5'- cCCGAccGcCCGCCcGUuGACCccGGAGGg -3'
miRNA:   3'- aGGCUuuC-GGUGGuUAuCUGG--UCUCC- -5'
5558 3' -50.8 NC_001806.1 + 134846 0.67 0.987391
Target:  5'- gCCGAccuGGCgCACCucgcAGGCCAGGcGGa -3'
miRNA:   3'- aGGCUu--UCG-GUGGuua-UCUGGUCU-CC- -5'
5558 3' -50.8 NC_001806.1 + 22109 0.67 0.987391
Target:  5'- -gCGAcAGCCGCCc--GGGCCucuGGGGg -3'
miRNA:   3'- agGCUuUCGGUGGuuaUCUGGu--CUCC- -5'
5558 3' -50.8 NC_001806.1 + 30028 0.67 0.9889
Target:  5'- -gCGGAggcggGGCgGCCGAgGGGCCGGAcGGg -3'
miRNA:   3'- agGCUU-----UCGgUGGUUaUCUGGUCU-CC- -5'
5558 3' -50.8 NC_001806.1 + 34410 0.67 0.9889
Target:  5'- gCCGGgccGGGCCggGCCGGgccGGGCCGGGuGGg -3'
miRNA:   3'- aGGCU---UUCGG--UGGUUa--UCUGGUCU-CC- -5'
5558 3' -50.8 NC_001806.1 + 71337 0.67 0.985554
Target:  5'- gCCGGAggccuaugggcacGGCCcacGCCAGgcGGACCGcGAGGg -3'
miRNA:   3'- aGGCUU-------------UCGG---UGGUUa-UCUGGU-CUCC- -5'
5558 3' -50.8 NC_001806.1 + 112244 0.67 0.990264
Target:  5'- gCCGccuGGCCACCAGgguGGCCcGGGc -3'
miRNA:   3'- aGGCuu-UCGGUGGUUau-CUGGuCUCc -5'
5558 3' -50.8 NC_001806.1 + 113172 0.67 0.990264
Target:  5'- gUCCGAuGGGUCGCgGA-AGGCCAGAu- -3'
miRNA:   3'- -AGGCU-UUCGGUGgUUaUCUGGUCUcc -5'
5558 3' -50.8 NC_001806.1 + 133232 0.67 0.990264
Target:  5'- cCCGGcGGGCCAUCGAgacGGCCGuGGGa -3'
miRNA:   3'- aGGCU-UUCGGUGGUUau-CUGGUcUCC- -5'
5558 3' -50.8 NC_001806.1 + 6630 0.67 0.985199
Target:  5'- aCCGgcGGCgACCGuugcGUGGACCgcuuccugcucgucGGGGGg -3'
miRNA:   3'- aGGCuuUCGgUGGU----UAUCUGG--------------UCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.