miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5558 3' -50.8 NC_001806.1 + 92474 0.67 0.983904
Target:  5'- gUCCG-AGGCCGCCAAggcgcgGGucgccagccuCCAGAGc -3'
miRNA:   3'- -AGGCuUUCGGUGGUUa-----UCu---------GGUCUCc -5'
5558 3' -50.8 NC_001806.1 + 22109 0.67 0.987391
Target:  5'- -gCGAcAGCCGCCc--GGGCCucuGGGGg -3'
miRNA:   3'- agGCUuUCGGUGGuuaUCUGGu--CUCC- -5'
5558 3' -50.8 NC_001806.1 + 113172 0.67 0.990264
Target:  5'- gUCCGAuGGGUCGCgGA-AGGCCAGAu- -3'
miRNA:   3'- -AGGCU-UUCGGUGgUUaUCUGGUCUcc -5'
5558 3' -50.8 NC_001806.1 + 112244 0.67 0.990264
Target:  5'- gCCGccuGGCCACCAGgguGGCCcGGGc -3'
miRNA:   3'- aGGCuu-UCGGUGGUUau-CUGGuCUCc -5'
5558 3' -50.8 NC_001806.1 + 54127 0.67 0.989462
Target:  5'- gUCCcGGGGCCcagggGCCGGUAGGCguguuccgaugcccgCAGAGGc -3'
miRNA:   3'- -AGGcUUUCGG-----UGGUUAUCUG---------------GUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 133232 0.67 0.990264
Target:  5'- cCCGGcGGGCCAUCGAgacGGCCGuGGGa -3'
miRNA:   3'- aGGCU-UUCGGUGGUUau-CUGGUcUCC- -5'
5558 3' -50.8 NC_001806.1 + 91872 0.67 0.987391
Target:  5'- cUCGAGAcCCugCAguacGUGGACCAGGcGGu -3'
miRNA:   3'- aGGCUUUcGGugGU----UAUCUGGUCU-CC- -5'
5558 3' -50.8 NC_001806.1 + 71246 0.67 0.9889
Target:  5'- gUCCGuuAGCCggACCGGagucucccagGGACCuGGAGGu -3'
miRNA:   3'- -AGGCuuUCGG--UGGUUa---------UCUGG-UCUCC- -5'
5558 3' -50.8 NC_001806.1 + 132685 0.67 0.9889
Target:  5'- cCUGggGGCCugGCCcgcgguggGGGCCAGGGu -3'
miRNA:   3'- aGGCuuUCGG--UGGuua-----UCUGGUCUCc -5'
5558 3' -50.8 NC_001806.1 + 82388 0.67 0.9889
Target:  5'- aCUGAAAgGCgCACCuggaggggAGGCUGGAGGg -3'
miRNA:   3'- aGGCUUU-CG-GUGGuua-----UCUGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 34410 0.67 0.9889
Target:  5'- gCCGGgccGGGCCggGCCGGgccGGGCCGGGuGGg -3'
miRNA:   3'- aGGCU---UUCGG--UGGUUa--UCUGGUCU-CC- -5'
5558 3' -50.8 NC_001806.1 + 30028 0.67 0.9889
Target:  5'- -gCGGAggcggGGCgGCCGAgGGGCCGGAcGGg -3'
miRNA:   3'- agGCUU-----UCGgUGGUUaUCUGGUCU-CC- -5'
5558 3' -50.8 NC_001806.1 + 32186 0.67 0.9889
Target:  5'- uUCUuAGAGaCCGCCGggGGACguGGGGu -3'
miRNA:   3'- -AGGcUUUC-GGUGGUuaUCUGguCUCC- -5'
5558 3' -50.8 NC_001806.1 + 84448 0.67 0.990264
Target:  5'- gCCGGuuuguGAGCCugcuucggGCCGcgGGGCCcGAGGc -3'
miRNA:   3'- aGGCU-----UUCGG--------UGGUuaUCUGGuCUCC- -5'
5558 3' -50.8 NC_001806.1 + 88204 0.68 0.979732
Target:  5'- cUCCGGGugcccGGCCACCGGaaAGGCCAGc-- -3'
miRNA:   3'- -AGGCUU-----UCGGUGGUUa-UCUGGUCucc -5'
5558 3' -50.8 NC_001806.1 + 86337 0.68 0.981908
Target:  5'- cCCGAAcGCCugCAGUcccucGGgCAGGGGu -3'
miRNA:   3'- aGGCUUuCGGugGUUAu----CUgGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 39569 0.68 0.979732
Target:  5'- gCCG-GGGCCACCAucuuGUGGGCgGGAc- -3'
miRNA:   3'- aGGCuUUCGGUGGU----UAUCUGgUCUcc -5'
5558 3' -50.8 NC_001806.1 + 141605 0.68 0.981908
Target:  5'- cUUGAcGGCCGCCAAgacauuccgaAGACuCGGGGGa -3'
miRNA:   3'- aGGCUuUCGGUGGUUa---------UCUG-GUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 81825 0.68 0.981908
Target:  5'- cCCGcAGGGCCuguGCCAc-GGGCgGGAGGg -3'
miRNA:   3'- aGGC-UUUCGG---UGGUuaUCUGgUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 149800 0.68 0.981908
Target:  5'- gCUGggGGCgGCCcucAGGCCGGcGGg -3'
miRNA:   3'- aGGCuuUCGgUGGuuaUCUGGUCuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.