miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5558 3' -50.8 NC_001806.1 + 64852 0.66 0.995239
Target:  5'- gUCCGAAAGCCccuCCGcgcGUcccGGGCCAcGGcGGg -3'
miRNA:   3'- -AGGCUUUCGGu--GGU---UA---UCUGGU-CU-CC- -5'
5558 3' -50.8 NC_001806.1 + 64942 0.72 0.895548
Target:  5'- gCUGAGGGaCCACCGgcGUcggcgcccGGGCCGGGGGu -3'
miRNA:   3'- aGGCUUUC-GGUGGU--UA--------UCUGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 65420 0.66 0.995239
Target:  5'- cUCCGAuguuuGUCACCGcaacgaagGGAgCGGGGGa -3'
miRNA:   3'- -AGGCUuu---CGGUGGUua------UCUgGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 65856 0.72 0.881509
Target:  5'- aCCGAGAGCCAaaaagAGUAGGCgAGAGc -3'
miRNA:   3'- aGGCUUUCGGUgg---UUAUCUGgUCUCc -5'
5558 3' -50.8 NC_001806.1 + 67211 0.67 0.983713
Target:  5'- gCCGGccuggcgGGGCgCGCUggUGGGCCAgguGAGGc -3'
miRNA:   3'- aGGCU-------UUCG-GUGGuuAUCUGGU---CUCC- -5'
5558 3' -50.8 NC_001806.1 + 71246 0.67 0.9889
Target:  5'- gUCCGuuAGCCggACCGGagucucccagGGACCuGGAGGu -3'
miRNA:   3'- -AGGCuuUCGG--UGGUUa---------UCUGG-UCUCC- -5'
5558 3' -50.8 NC_001806.1 + 71337 0.67 0.985554
Target:  5'- gCCGGAggccuaugggcacGGCCcacGCCAGgcGGACCGcGAGGg -3'
miRNA:   3'- aGGCUU-------------UCGG---UGGUUa-UCUGGU-CUCC- -5'
5558 3' -50.8 NC_001806.1 + 71901 0.66 0.992596
Target:  5'- gUCCGcgGAGGCCAUCGAgggauguuUGGuCgAGGGGg -3'
miRNA:   3'- -AGGC--UUUCGGUGGUU--------AUCuGgUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 72644 0.67 0.985729
Target:  5'- cCCGggGGaCgGCCGGUccgucGGcaaaACCAGAGGc -3'
miRNA:   3'- aGGCuuUC-GgUGGUUA-----UC----UGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 73112 0.68 0.977366
Target:  5'- cCCGGccGGGCCGCCGGUcgccgAGGCgGgcGAGGa -3'
miRNA:   3'- aGGCU--UUCGGUGGUUA-----UCUGgU--CUCC- -5'
5558 3' -50.8 NC_001806.1 + 73441 0.66 0.99446
Target:  5'- cCCGGAcGCaCACCc--AGGCCGGGGu -3'
miRNA:   3'- aGGCUUuCG-GUGGuuaUCUGGUCUCc -5'
5558 3' -50.8 NC_001806.1 + 75434 0.74 0.788836
Target:  5'- gCCG--GGCCGCCAAccaACCGGAGGg -3'
miRNA:   3'- aGGCuuUCGGUGGUUaucUGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 76530 0.7 0.929576
Target:  5'- gCCG-AAGCCACCGAgcgggucacggcgGGGCUgcgGGAGGu -3'
miRNA:   3'- aGGCuUUCGGUGGUUa------------UCUGG---UCUCC- -5'
5558 3' -50.8 NC_001806.1 + 77970 0.66 0.99446
Target:  5'- cCCG-GGGCCGCCGcucGGACCccAGAGc -3'
miRNA:   3'- aGGCuUUCGGUGGUua-UCUGG--UCUCc -5'
5558 3' -50.8 NC_001806.1 + 78202 0.69 0.965856
Target:  5'- aUCCGcguGCUGCCAGcguuuucGGCCGGAGGc -3'
miRNA:   3'- -AGGCuuuCGGUGGUUau-----CUGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 81603 0.73 0.833919
Target:  5'- -gCGGGacGGCCAUCG--GGACCGGAGGu -3'
miRNA:   3'- agGCUU--UCGGUGGUuaUCUGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 81825 0.68 0.981908
Target:  5'- cCCGcAGGGCCuguGCCAc-GGGCgGGAGGg -3'
miRNA:   3'- aGGC-UUUCGG---UGGUuaUCUGgUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 82388 0.67 0.9889
Target:  5'- aCUGAAAgGCgCACCuggaggggAGGCUGGAGGg -3'
miRNA:   3'- aGGCUUU-CG-GUGGuua-----UCUGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 83721 0.74 0.816411
Target:  5'- cCCGGGAGCCGCCAA-GGugCAGu-- -3'
miRNA:   3'- aGGCUUUCGGUGGUUaUCugGUCucc -5'
5558 3' -50.8 NC_001806.1 + 83969 0.68 0.981908
Target:  5'- aUUCGAGacGGUCGCCGGggaccgcgAG-CCGGAGGa -3'
miRNA:   3'- -AGGCUU--UCGGUGGUUa-------UCuGGUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.