Results 41 - 60 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5558 | 3' | -50.8 | NC_001806.1 | + | 73112 | 0.68 | 0.977366 |
Target: 5'- cCCGGccGGGCCGCCGGUcgccgAGGCgGgcGAGGa -3' miRNA: 3'- aGGCU--UUCGGUGGUUA-----UCUGgU--CUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 39569 | 0.68 | 0.979732 |
Target: 5'- gCCG-GGGCCACCAucuuGUGGGCgGGAc- -3' miRNA: 3'- aGGCuUUCGGUGGU----UAUCUGgUCUcc -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 88204 | 0.68 | 0.979732 |
Target: 5'- cUCCGGGugcccGGCCACCGGaaAGGCCAGc-- -3' miRNA: 3'- -AGGCUU-----UCGGUGGUUa-UCUGGUCucc -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 86337 | 0.68 | 0.981908 |
Target: 5'- cCCGAAcGCCugCAGUcccucGGgCAGGGGu -3' miRNA: 3'- aGGCUUuCGGugGUUAu----CUgGUCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 83969 | 0.68 | 0.981908 |
Target: 5'- aUUCGAGacGGUCGCCGGggaccgcgAG-CCGGAGGa -3' miRNA: 3'- -AGGCUU--UCGGUGGUUa-------UCuGGUCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 141605 | 0.68 | 0.981908 |
Target: 5'- cUUGAcGGCCGCCAAgacauuccgaAGACuCGGGGGa -3' miRNA: 3'- aGGCUuUCGGUGGUUa---------UCUG-GUCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 81825 | 0.68 | 0.981908 |
Target: 5'- cCCGcAGGGCCuguGCCAc-GGGCgGGAGGg -3' miRNA: 3'- aGGC-UUUCGG---UGGUuaUCUGgUCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 149800 | 0.68 | 0.981908 |
Target: 5'- gCUGggGGCgGCCcucAGGCCGGcGGg -3' miRNA: 3'- aGGCuuUCGgUGGuuaUCUGGUCuCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 67211 | 0.67 | 0.983713 |
Target: 5'- gCCGGccuggcgGGGCgCGCUggUGGGCCAgguGAGGc -3' miRNA: 3'- aGGCU-------UUCG-GUGGuuAUCUGGU---CUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 92474 | 0.67 | 0.983904 |
Target: 5'- gUCCG-AGGCCGCCAAggcgcgGGucgccagccuCCAGAGc -3' miRNA: 3'- -AGGCuUUCGGUGGUUa-----UCu---------GGUCUCc -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 95416 | 0.67 | 0.983904 |
Target: 5'- -aCGAAGaccGUCGCCGcgGGcCCGGGGGg -3' miRNA: 3'- agGCUUU---CGGUGGUuaUCuGGUCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 56161 | 0.67 | 0.983904 |
Target: 5'- cCCGAccGcCCGCCcGUuGACCccGGAGGg -3' miRNA: 3'- aGGCUuuC-GGUGGuUAuCUGG--UCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 6630 | 0.67 | 0.985199 |
Target: 5'- aCCGgcGGCgACCGuugcGUGGACCgcuuccugcucgucGGGGGg -3' miRNA: 3'- aGGCuuUCGgUGGU----UAUCUGG--------------UCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 71337 | 0.67 | 0.985554 |
Target: 5'- gCCGGAggccuaugggcacGGCCcacGCCAGgcGGACCGcGAGGg -3' miRNA: 3'- aGGCUU-------------UCGG---UGGUUa-UCUGGU-CUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 8248 | 0.67 | 0.985729 |
Target: 5'- gCCGAuGAGCCACCGcacccuugGGugCGGGuGGu -3' miRNA: 3'- aGGCU-UUCGGUGGUua------UCugGUCU-CC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 18650 | 0.67 | 0.985729 |
Target: 5'- gUCCGAAccGGCgGCCuccAGAUCGGuGGc -3' miRNA: 3'- -AGGCUU--UCGgUGGuuaUCUGGUCuCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 72644 | 0.67 | 0.985729 |
Target: 5'- cCCGggGGaCgGCCGGUccgucGGcaaaACCAGAGGc -3' miRNA: 3'- aGGCuuUC-GgUGGUUA-----UC----UGGUCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 93592 | 0.67 | 0.985729 |
Target: 5'- cCCGggGGCC-CCG--GGACCGGc-- -3' miRNA: 3'- aGGCuuUCGGuGGUuaUCUGGUCucc -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 102747 | 0.67 | 0.985729 |
Target: 5'- cCCGAAAGUCGgCAcugcggGUGG-UCAGGGGa -3' miRNA: 3'- aGGCUUUCGGUgGU------UAUCuGGUCUCC- -5' |
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5558 | 3' | -50.8 | NC_001806.1 | + | 22109 | 0.67 | 0.987391 |
Target: 5'- -gCGAcAGCCGCCc--GGGCCucuGGGGg -3' miRNA: 3'- agGCUuUCGGUGGuuaUCUGGu--CUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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