miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5558 3' -50.8 NC_001806.1 + 91872 0.67 0.987391
Target:  5'- cUCGAGAcCCugCAguacGUGGACCAGGcGGu -3'
miRNA:   3'- aGGCUUUcGGugGU----UAUCUGGUCU-CC- -5'
5558 3' -50.8 NC_001806.1 + 134846 0.67 0.987391
Target:  5'- gCCGAccuGGCgCACCucgcAGGCCAGGcGGa -3'
miRNA:   3'- aGGCUu--UCG-GUGGuua-UCUGGUCU-CC- -5'
5558 3' -50.8 NC_001806.1 + 22109 0.67 0.987391
Target:  5'- -gCGAcAGCCGCCc--GGGCCucuGGGGg -3'
miRNA:   3'- agGCUuUCGGUGGuuaUCUGGu--CUCC- -5'
5558 3' -50.8 NC_001806.1 + 8248 0.67 0.985729
Target:  5'- gCCGAuGAGCCACCGcacccuugGGugCGGGuGGu -3'
miRNA:   3'- aGGCU-UUCGGUGGUua------UCugGUCU-CC- -5'
5558 3' -50.8 NC_001806.1 + 18650 0.67 0.985729
Target:  5'- gUCCGAAccGGCgGCCuccAGAUCGGuGGc -3'
miRNA:   3'- -AGGCUU--UCGgUGGuuaUCUGGUCuCC- -5'
5558 3' -50.8 NC_001806.1 + 72644 0.67 0.985729
Target:  5'- cCCGggGGaCgGCCGGUccgucGGcaaaACCAGAGGc -3'
miRNA:   3'- aGGCuuUC-GgUGGUUA-----UC----UGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 93592 0.67 0.985729
Target:  5'- cCCGggGGCC-CCG--GGACCGGc-- -3'
miRNA:   3'- aGGCuuUCGGuGGUuaUCUGGUCucc -5'
5558 3' -50.8 NC_001806.1 + 102747 0.67 0.985729
Target:  5'- cCCGAAAGUCGgCAcugcggGUGG-UCAGGGGa -3'
miRNA:   3'- aGGCUUUCGGUgGU------UAUCuGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 71337 0.67 0.985554
Target:  5'- gCCGGAggccuaugggcacGGCCcacGCCAGgcGGACCGcGAGGg -3'
miRNA:   3'- aGGCUU-------------UCGG---UGGUUa-UCUGGU-CUCC- -5'
5558 3' -50.8 NC_001806.1 + 6630 0.67 0.985199
Target:  5'- aCCGgcGGCgACCGuugcGUGGACCgcuuccugcucgucGGGGGg -3'
miRNA:   3'- aGGCuuUCGgUGGU----UAUCUGG--------------UCUCC- -5'
5558 3' -50.8 NC_001806.1 + 92474 0.67 0.983904
Target:  5'- gUCCG-AGGCCGCCAAggcgcgGGucgccagccuCCAGAGc -3'
miRNA:   3'- -AGGCuUUCGGUGGUUa-----UCu---------GGUCUCc -5'
5558 3' -50.8 NC_001806.1 + 95416 0.67 0.983904
Target:  5'- -aCGAAGaccGUCGCCGcgGGcCCGGGGGg -3'
miRNA:   3'- agGCUUU---CGGUGGUuaUCuGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 56161 0.67 0.983904
Target:  5'- cCCGAccGcCCGCCcGUuGACCccGGAGGg -3'
miRNA:   3'- aGGCUuuC-GGUGGuUAuCUGG--UCUCC- -5'
5558 3' -50.8 NC_001806.1 + 67211 0.67 0.983713
Target:  5'- gCCGGccuggcgGGGCgCGCUggUGGGCCAgguGAGGc -3'
miRNA:   3'- aGGCU-------UUCG-GUGGuuAUCUGGU---CUCC- -5'
5558 3' -50.8 NC_001806.1 + 86337 0.68 0.981908
Target:  5'- cCCGAAcGCCugCAGUcccucGGgCAGGGGu -3'
miRNA:   3'- aGGCUUuCGGugGUUAu----CUgGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 141605 0.68 0.981908
Target:  5'- cUUGAcGGCCGCCAAgacauuccgaAGACuCGGGGGa -3'
miRNA:   3'- aGGCUuUCGGUGGUUa---------UCUG-GUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 81825 0.68 0.981908
Target:  5'- cCCGcAGGGCCuguGCCAc-GGGCgGGAGGg -3'
miRNA:   3'- aGGC-UUUCGG---UGGUuaUCUGgUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 149800 0.68 0.981908
Target:  5'- gCUGggGGCgGCCcucAGGCCGGcGGg -3'
miRNA:   3'- aGGCuuUCGgUGGuuaUCUGGUCuCC- -5'
5558 3' -50.8 NC_001806.1 + 83969 0.68 0.981908
Target:  5'- aUUCGAGacGGUCGCCGGggaccgcgAG-CCGGAGGa -3'
miRNA:   3'- -AGGCUU--UCGGUGGUUa-------UCuGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 88204 0.68 0.979732
Target:  5'- cUCCGGGugcccGGCCACCGGaaAGGCCAGc-- -3'
miRNA:   3'- -AGGCUU-----UCGGUGGUUa-UCUGGUCucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.