miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5558 3' -50.8 NC_001806.1 + 41739 0.66 0.993582
Target:  5'- -aCGcgGGCCACCcgcgggGGACCAGGa- -3'
miRNA:   3'- agGCuuUCGGUGGuua---UCUGGUCUcc -5'
5558 3' -50.8 NC_001806.1 + 139830 0.66 0.993582
Target:  5'- gCCGGGAG-CGCCA--GGACCgccugccgcgcGGAGGc -3'
miRNA:   3'- aGGCUUUCgGUGGUuaUCUGG-----------UCUCC- -5'
5558 3' -50.8 NC_001806.1 + 28157 0.66 0.993489
Target:  5'- cCUGAGGGCCGCCcccagcgcgagguGAgGGGCCGGGc- -3'
miRNA:   3'- aGGCUUUCGGUGG-------------UUaUCUGGUCUcc -5'
5558 3' -50.8 NC_001806.1 + 4624 0.66 0.993201
Target:  5'- gCCGAuGGCCGCCAccggccgugacgacGUcuccgcggcggcuGGGCCGGcGGg -3'
miRNA:   3'- aGGCUuUCGGUGGU--------------UA-------------UCUGGUCuCC- -5'
5558 3' -50.8 NC_001806.1 + 136794 0.66 0.992596
Target:  5'- gCCGGGuGGUCGCCucgcUGGACCGGAc- -3'
miRNA:   3'- aGGCUU-UCGGUGGuu--AUCUGGUCUcc -5'
5558 3' -50.8 NC_001806.1 + 71901 0.66 0.992596
Target:  5'- gUCCGcgGAGGCCAUCGAgggauguuUGGuCgAGGGGg -3'
miRNA:   3'- -AGGC--UUUCGGUGGUU--------AUCuGgUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 4864 0.66 0.992596
Target:  5'- gUCCGGAcGGCCuccucuACCAuggAGGCCAGcAGa -3'
miRNA:   3'- -AGGCUU-UCGG------UGGUua-UCUGGUC-UCc -5'
5558 3' -50.8 NC_001806.1 + 144973 0.66 0.992596
Target:  5'- cCCGGcccgGGGCC-CCGGcGGACCcaAGGGGc -3'
miRNA:   3'- aGGCU----UUCGGuGGUUaUCUGG--UCUCC- -5'
5558 3' -50.8 NC_001806.1 + 20706 0.66 0.991493
Target:  5'- uUCCGuucgggguGGGcCCGCCGggGGGgCGGGGGg -3'
miRNA:   3'- -AGGCu-------UUC-GGUGGUuaUCUgGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 113172 0.67 0.990264
Target:  5'- gUCCGAuGGGUCGCgGA-AGGCCAGAu- -3'
miRNA:   3'- -AGGCU-UUCGGUGgUUaUCUGGUCUcc -5'
5558 3' -50.8 NC_001806.1 + 84448 0.67 0.990264
Target:  5'- gCCGGuuuguGAGCCugcuucggGCCGcgGGGCCcGAGGc -3'
miRNA:   3'- aGGCU-----UUCGG--------UGGUuaUCUGGuCUCC- -5'
5558 3' -50.8 NC_001806.1 + 112244 0.67 0.990264
Target:  5'- gCCGccuGGCCACCAGgguGGCCcGGGc -3'
miRNA:   3'- aGGCuu-UCGGUGGUUau-CUGGuCUCc -5'
5558 3' -50.8 NC_001806.1 + 133232 0.67 0.990264
Target:  5'- cCCGGcGGGCCAUCGAgacGGCCGuGGGa -3'
miRNA:   3'- aGGCU-UUCGGUGGUUau-CUGGUcUCC- -5'
5558 3' -50.8 NC_001806.1 + 54127 0.67 0.989462
Target:  5'- gUCCcGGGGCCcagggGCCGGUAGGCguguuccgaugcccgCAGAGGc -3'
miRNA:   3'- -AGGcUUUCGG-----UGGUUAUCUG---------------GUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 32186 0.67 0.9889
Target:  5'- uUCUuAGAGaCCGCCGggGGACguGGGGu -3'
miRNA:   3'- -AGGcUUUC-GGUGGUuaUCUGguCUCC- -5'
5558 3' -50.8 NC_001806.1 + 30028 0.67 0.9889
Target:  5'- -gCGGAggcggGGCgGCCGAgGGGCCGGAcGGg -3'
miRNA:   3'- agGCUU-----UCGgUGGUUaUCUGGUCU-CC- -5'
5558 3' -50.8 NC_001806.1 + 34410 0.67 0.9889
Target:  5'- gCCGGgccGGGCCggGCCGGgccGGGCCGGGuGGg -3'
miRNA:   3'- aGGCU---UUCGG--UGGUUa--UCUGGUCU-CC- -5'
5558 3' -50.8 NC_001806.1 + 71246 0.67 0.9889
Target:  5'- gUCCGuuAGCCggACCGGagucucccagGGACCuGGAGGu -3'
miRNA:   3'- -AGGCuuUCGG--UGGUUa---------UCUGG-UCUCC- -5'
5558 3' -50.8 NC_001806.1 + 132685 0.67 0.9889
Target:  5'- cCUGggGGCCugGCCcgcgguggGGGCCAGGGu -3'
miRNA:   3'- aGGCuuUCGG--UGGuua-----UCUGGUCUCc -5'
5558 3' -50.8 NC_001806.1 + 82388 0.67 0.9889
Target:  5'- aCUGAAAgGCgCACCuggaggggAGGCUGGAGGg -3'
miRNA:   3'- aGGCUUU-CG-GUGGuua-----UCUGGUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.