miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5558 3' -50.8 NC_001806.1 + 27349 0.66 0.99446
Target:  5'- -gCGGGAGUUACCGcccaAUGGGCCGGGc- -3'
miRNA:   3'- agGCUUUCGGUGGU----UAUCUGGUCUcc -5'
5558 3' -50.8 NC_001806.1 + 28157 0.66 0.993489
Target:  5'- cCUGAGGGCCGCCcccagcgcgagguGAgGGGCCGGGc- -3'
miRNA:   3'- aGGCUUUCGGUGG-------------UUaUCUGGUCUcc -5'
5558 3' -50.8 NC_001806.1 + 30028 0.67 0.9889
Target:  5'- -gCGGAggcggGGCgGCCGAgGGGCCGGAcGGg -3'
miRNA:   3'- agGCUU-----UCGgUGGUUaUCUGGUCU-CC- -5'
5558 3' -50.8 NC_001806.1 + 31800 0.66 0.99446
Target:  5'- cCCGAAAGCauccuGCCAcuggcAUGGAgCCAGAa- -3'
miRNA:   3'- aGGCUUUCGg----UGGU-----UAUCU-GGUCUcc -5'
5558 3' -50.8 NC_001806.1 + 31883 0.71 0.924642
Target:  5'- cCCGGAcugaccuggccucuGGCCGCCAcaaaGGGCgGGGGGg -3'
miRNA:   3'- aGGCUU--------------UCGGUGGUua--UCUGgUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 32186 0.67 0.9889
Target:  5'- uUCUuAGAGaCCGCCGggGGACguGGGGu -3'
miRNA:   3'- -AGGcUUUC-GGUGGUuaUCUGguCUCC- -5'
5558 3' -50.8 NC_001806.1 + 32992 0.7 0.946356
Target:  5'- cCCGGgccGGGCCGCCAcggGGGCCGGccguuGGc -3'
miRNA:   3'- aGGCU---UUCGGUGGUua-UCUGGUCu----CC- -5'
5558 3' -50.8 NC_001806.1 + 33983 0.74 0.807386
Target:  5'- gCCGggGGUCGCCGGggcaGGGgCGGGGGc -3'
miRNA:   3'- aGGCuuUCGGUGGUUa---UCUgGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 34410 0.67 0.9889
Target:  5'- gCCGGgccGGGCCggGCCGGgccGGGCCGGGuGGg -3'
miRNA:   3'- aGGCU---UUCGG--UGGUUa--UCUGGUCU-CC- -5'
5558 3' -50.8 NC_001806.1 + 39569 0.68 0.979732
Target:  5'- gCCG-GGGCCACCAucuuGUGGGCgGGAc- -3'
miRNA:   3'- aGGCuUUCGGUGGU----UAUCUGgUCUcc -5'
5558 3' -50.8 NC_001806.1 + 41359 0.66 0.993582
Target:  5'- cCCGGcauccAGGCCGCCAggGGGCaucacGGGGc -3'
miRNA:   3'- aGGCU-----UUCGGUGGUuaUCUGgu---CUCC- -5'
5558 3' -50.8 NC_001806.1 + 41739 0.66 0.993582
Target:  5'- -aCGcgGGCCACCcgcgggGGACCAGGa- -3'
miRNA:   3'- agGCuuUCGGUGGuua---UCUGGUCUcc -5'
5558 3' -50.8 NC_001806.1 + 43029 0.66 0.993582
Target:  5'- aCCGGcucGGCCcCCAGUAGAgaguuUguGAGGa -3'
miRNA:   3'- aGGCUu--UCGGuGGUUAUCU-----GguCUCC- -5'
5558 3' -50.8 NC_001806.1 + 49573 0.78 0.59387
Target:  5'- cCCGGAAGCCGUC---GGGCCGGAGGa -3'
miRNA:   3'- aGGCUUUCGGUGGuuaUCUGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 52928 0.66 0.995239
Target:  5'- cUCGAucGGCCACgGGUguggGGACCcgccccGGAGGg -3'
miRNA:   3'- aGGCUu-UCGGUGgUUA----UCUGG------UCUCC- -5'
5558 3' -50.8 NC_001806.1 + 53814 0.69 0.965856
Target:  5'- cUCCGcucacCCACCAGUAG-CCcGAGGa -3'
miRNA:   3'- -AGGCuuuc-GGUGGUUAUCuGGuCUCC- -5'
5558 3' -50.8 NC_001806.1 + 54127 0.67 0.989462
Target:  5'- gUCCcGGGGCCcagggGCCGGUAGGCguguuccgaugcccgCAGAGGc -3'
miRNA:   3'- -AGGcUUUCGG-----UGGUUAUCUG---------------GUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 56161 0.67 0.983904
Target:  5'- cCCGAccGcCCGCCcGUuGACCccGGAGGg -3'
miRNA:   3'- aGGCUuuC-GGUGGuUAuCUGG--UCUCC- -5'
5558 3' -50.8 NC_001806.1 + 59059 0.69 0.965856
Target:  5'- -gCGggGGCCACacc---GCCAGGGGa -3'
miRNA:   3'- agGCuuUCGGUGguuaucUGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 60603 0.7 0.950739
Target:  5'- aCCGggGGCCACCcc--GGCCccAGGu -3'
miRNA:   3'- aGGCuuUCGGUGGuuauCUGGucUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.