miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5558 3' -50.8 NC_001806.1 + 127696 0.66 0.99446
Target:  5'- gUCGAGcuGGCCGCCGuaugAGAUCgcguAGGGGu -3'
miRNA:   3'- aGGCUU--UCGGUGGUua--UCUGG----UCUCC- -5'
5558 3' -50.8 NC_001806.1 + 117699 0.66 0.99446
Target:  5'- cCCGAGcccgcgucGGCCcCCuccgAGGCCAGuAGGc -3'
miRNA:   3'- aGGCUU--------UCGGuGGuua-UCUGGUC-UCC- -5'
5558 3' -50.8 NC_001806.1 + 115851 0.66 0.995165
Target:  5'- uUCCGAGGGCCGggccccauaaaacCCAAgccgGGACUccgcGGAcGGa -3'
miRNA:   3'- -AGGCUUUCGGU-------------GGUUa---UCUGG----UCU-CC- -5'
5558 3' -50.8 NC_001806.1 + 113172 0.67 0.990264
Target:  5'- gUCCGAuGGGUCGCgGA-AGGCCAGAu- -3'
miRNA:   3'- -AGGCU-UUCGGUGgUUaUCUGGUCUcc -5'
5558 3' -50.8 NC_001806.1 + 112244 0.67 0.990264
Target:  5'- gCCGccuGGCCACCAGgguGGCCcGGGc -3'
miRNA:   3'- aGGCuu-UCGGUGGUUau-CUGGuCUCc -5'
5558 3' -50.8 NC_001806.1 + 109535 0.66 0.993582
Target:  5'- cUCGGGAGCCgggggaggugcGCC--UGGGCCAGGGc -3'
miRNA:   3'- aGGCUUUCGG-----------UGGuuAUCUGGUCUCc -5'
5558 3' -50.8 NC_001806.1 + 107027 0.68 0.972036
Target:  5'- gCCGGGuuGGCCGCCcgcgGGGCCGcGGGc -3'
miRNA:   3'- aGGCUU--UCGGUGGuua-UCUGGUcUCC- -5'
5558 3' -50.8 NC_001806.1 + 102747 0.67 0.985729
Target:  5'- cCCGAAAGUCGgCAcugcggGUGG-UCAGGGGa -3'
miRNA:   3'- aGGCUUUCGGUgGU------UAUCuGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 102039 0.66 0.995239
Target:  5'- cUCCGcucuugauGGCCcCCGAgucGGAcCCGGAGGc -3'
miRNA:   3'- -AGGCuu------UCGGuGGUUa--UCU-GGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 98020 0.69 0.96243
Target:  5'- gCCuc-GGCCACC-GUGGGCCGGcGGg -3'
miRNA:   3'- aGGcuuUCGGUGGuUAUCUGGUCuCC- -5'
5558 3' -50.8 NC_001806.1 + 95416 0.67 0.983904
Target:  5'- -aCGAAGaccGUCGCCGcgGGcCCGGGGGg -3'
miRNA:   3'- agGCUUU---CGGUGGUuaUCuGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 93592 0.67 0.985729
Target:  5'- cCCGggGGCC-CCG--GGACCGGc-- -3'
miRNA:   3'- aGGCuuUCGGuGGUuaUCUGGUCucc -5'
5558 3' -50.8 NC_001806.1 + 92474 0.67 0.983904
Target:  5'- gUCCG-AGGCCGCCAAggcgcgGGucgccagccuCCAGAGc -3'
miRNA:   3'- -AGGCuUUCGGUGGUUa-----UCu---------GGUCUCc -5'
5558 3' -50.8 NC_001806.1 + 91872 0.67 0.987391
Target:  5'- cUCGAGAcCCugCAguacGUGGACCAGGcGGu -3'
miRNA:   3'- aGGCUUUcGGugGU----UAUCUGGUCU-CC- -5'
5558 3' -50.8 NC_001806.1 + 91348 0.7 0.950739
Target:  5'- cCCGGGacccacguggcGGCCAacCCAcagGUGGACCGcGAGGg -3'
miRNA:   3'- aGGCUU-----------UCGGU--GGU---UAUCUGGU-CUCC- -5'
5558 3' -50.8 NC_001806.1 + 89301 0.69 0.969055
Target:  5'- cCCGGAcgccgcccuGGCCGCCGAcuuuccuCCGGGGGa -3'
miRNA:   3'- aGGCUU---------UCGGUGGUUaucu---GGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 88997 0.69 0.969055
Target:  5'- gCCaGAAGCCGCCcgacccGACgCGGAGGa -3'
miRNA:   3'- aGGcUUUCGGUGGuuau--CUG-GUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 88360 0.71 0.914761
Target:  5'- cCCGAAGGCCAUCG--GGGCCGccGGc -3'
miRNA:   3'- aGGCUUUCGGUGGUuaUCUGGUcuCC- -5'
5558 3' -50.8 NC_001806.1 + 88204 0.68 0.979732
Target:  5'- cUCCGGGugcccGGCCACCGGaaAGGCCAGc-- -3'
miRNA:   3'- -AGGCUU-----UCGGUGGUUa-UCUGGUCucc -5'
5558 3' -50.8 NC_001806.1 + 86337 0.68 0.981908
Target:  5'- cCCGAAcGCCugCAGUcccucGGgCAGGGGu -3'
miRNA:   3'- aGGCUUuCGGugGUUAu----CUgGUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.