miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5558 3' -50.8 NC_001806.1 + 151261 0.66 0.994939
Target:  5'- cCCG--GGCCcacGCCGGgcggugggggccgGGGCCGGGGGg -3'
miRNA:   3'- aGGCuuUCGG---UGGUUa------------UCUGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 150683 0.7 0.941724
Target:  5'- gCUGgcGGCCGCCGAUGG-CCAgucccgcccccGAGGc -3'
miRNA:   3'- aGGCuuUCGGUGGUUAUCuGGU-----------CUCC- -5'
5558 3' -50.8 NC_001806.1 + 149800 0.68 0.981908
Target:  5'- gCUGggGGCgGCCcucAGGCCGGcGGg -3'
miRNA:   3'- aGGCuuUCGgUGGuuaUCUGGUCuCC- -5'
5558 3' -50.8 NC_001806.1 + 147823 0.74 0.798191
Target:  5'- gCgGggGGCCugUGGggagAGGCCGGGGGg -3'
miRNA:   3'- aGgCuuUCGGugGUUa---UCUGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 147682 0.66 0.995239
Target:  5'- cCCGggGGCCgggGCgCGGgggcGGGCCccGGAGGc -3'
miRNA:   3'- aGGCuuUCGG---UG-GUUa---UCUGG--UCUCC- -5'
5558 3' -50.8 NC_001806.1 + 147278 0.76 0.667708
Target:  5'- -gCGGAGGCCGCCGA-GGACguCAGGGGg -3'
miRNA:   3'- agGCUUUCGGUGGUUaUCUG--GUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 144973 0.66 0.992596
Target:  5'- cCCGGcccgGGGCC-CCGGcGGACCcaAGGGGc -3'
miRNA:   3'- aGGCU----UUCGGuGGUUaUCUGG--UCUCC- -5'
5558 3' -50.8 NC_001806.1 + 144795 0.66 0.993582
Target:  5'- -gCGAAGGCCGCguAcggcccgGGACgAGGGGc -3'
miRNA:   3'- agGCUUUCGGUGguUa------UCUGgUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 141605 0.68 0.981908
Target:  5'- cUUGAcGGCCGCCAAgacauuccgaAGACuCGGGGGa -3'
miRNA:   3'- aGGCUuUCGGUGGUUa---------UCUG-GUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 141124 0.7 0.950739
Target:  5'- cCCGAca-UCACCGAcccguaugAGACCAGAGGu -3'
miRNA:   3'- aGGCUuucGGUGGUUa-------UCUGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 139830 0.66 0.993582
Target:  5'- gCCGGGAG-CGCCA--GGACCgccugccgcgcGGAGGc -3'
miRNA:   3'- aGGCUUUCgGUGGUuaUCUGG-----------UCUCC- -5'
5558 3' -50.8 NC_001806.1 + 136794 0.66 0.992596
Target:  5'- gCCGGGuGGUCGCCucgcUGGACCGGAc- -3'
miRNA:   3'- aGGCUU-UCGGUGGuu--AUCUGGUCUcc -5'
5558 3' -50.8 NC_001806.1 + 136703 0.68 0.977119
Target:  5'- aCCGcgGGCCGCCAcguGGCCGagcaguccgccucGAGGu -3'
miRNA:   3'- aGGCuuUCGGUGGUuauCUGGU-------------CUCC- -5'
5558 3' -50.8 NC_001806.1 + 134846 0.67 0.987391
Target:  5'- gCCGAccuGGCgCACCucgcAGGCCAGGcGGa -3'
miRNA:   3'- aGGCUu--UCG-GUGGuua-UCUGGUCU-CC- -5'
5558 3' -50.8 NC_001806.1 + 134214 0.69 0.954876
Target:  5'- cCCGGcgggguuauAGGCCACgCAGUcGGAgCGGGGGg -3'
miRNA:   3'- aGGCU---------UUCGGUG-GUUA-UCUgGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 134148 1.11 0.007205
Target:  5'- cUCCGAAAGCCACCAAUAGACCAGAGGc -3'
miRNA:   3'- -AGGCUUUCGGUGGUUAUCUGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 133232 0.67 0.990264
Target:  5'- cCCGGcGGGCCAUCGAgacGGCCGuGGGa -3'
miRNA:   3'- aGGCU-UUCGGUGGUUau-CUGGUcUCC- -5'
5558 3' -50.8 NC_001806.1 + 132685 0.67 0.9889
Target:  5'- cCUGggGGCCugGCCcgcgguggGGGCCAGGGu -3'
miRNA:   3'- aGGCuuUCGG--UGGuua-----UCUGGUCUCc -5'
5558 3' -50.8 NC_001806.1 + 130492 0.7 0.941724
Target:  5'- gCCGGcccAGGCCGCCG--AGA-CGGAGGa -3'
miRNA:   3'- aGGCU---UUCGGUGGUuaUCUgGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 129694 0.71 0.914761
Target:  5'- cUCCGGAcGCCucuCCGGaGGcCCGGGGGg -3'
miRNA:   3'- -AGGCUUuCGGu--GGUUaUCuGGUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.