miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5558 3' -50.8 NC_001806.1 + 32992 0.7 0.946356
Target:  5'- cCCGGgccGGGCCGCCAcggGGGCCGGccguuGGc -3'
miRNA:   3'- aGGCU---UUCGGUGGUua-UCUGGUCu----CC- -5'
5558 3' -50.8 NC_001806.1 + 19358 0.7 0.946356
Target:  5'- cUCCGGGgggcccuacGGCCACCGAU--GCgGGGGGc -3'
miRNA:   3'- -AGGCUU---------UCGGUGGUUAucUGgUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 60603 0.7 0.950739
Target:  5'- aCCGggGGCCACCcc--GGCCccAGGu -3'
miRNA:   3'- aGGCuuUCGGUGGuuauCUGGucUCC- -5'
5558 3' -50.8 NC_001806.1 + 91348 0.7 0.950739
Target:  5'- cCCGGGacccacguggcGGCCAacCCAcagGUGGACCGcGAGGg -3'
miRNA:   3'- aGGCUU-----------UCGGU--GGU---UAUCUGGU-CUCC- -5'
5558 3' -50.8 NC_001806.1 + 141124 0.7 0.950739
Target:  5'- cCCGAca-UCACCGAcccguaugAGACCAGAGGu -3'
miRNA:   3'- aGGCUuucGGUGGUUa-------UCUGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 134214 0.69 0.954876
Target:  5'- cCCGGcgggguuauAGGCCACgCAGUcGGAgCGGGGGg -3'
miRNA:   3'- aGGCU---------UUCGGUG-GUUA-UCUgGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 98020 0.69 0.96243
Target:  5'- gCCuc-GGCCACC-GUGGGCCGGcGGg -3'
miRNA:   3'- aGGcuuUCGGUGGuUAUCUGGUCuCC- -5'
5558 3' -50.8 NC_001806.1 + 78202 0.69 0.965856
Target:  5'- aUCCGcguGCUGCCAGcguuuucGGCCGGAGGc -3'
miRNA:   3'- -AGGCuuuCGGUGGUUau-----CUGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 22891 0.69 0.965856
Target:  5'- gCCGGGgcccGGcCCGCCAGccccccgcGGCCGGAGGg -3'
miRNA:   3'- aGGCUU----UC-GGUGGUUau------CUGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 59059 0.69 0.965856
Target:  5'- -gCGggGGCCACacc---GCCAGGGGa -3'
miRNA:   3'- agGCuuUCGGUGguuaucUGGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 53814 0.69 0.965856
Target:  5'- cUCCGcucacCCACCAGUAG-CCcGAGGa -3'
miRNA:   3'- -AGGCuuuc-GGUGGUUAUCuGGuCUCC- -5'
5558 3' -50.8 NC_001806.1 + 22462 0.69 0.965856
Target:  5'- gCCGuggccauGAGCCGCCGAUAcGACCgcgcgcAGaAGGg -3'
miRNA:   3'- aGGCu------UUCGGUGGUUAU-CUGG------UC-UCC- -5'
5558 3' -50.8 NC_001806.1 + 10702 0.69 0.965856
Target:  5'- gCCGggGGggcguacgccaUCGCCAGcgGGACCGGAGc -3'
miRNA:   3'- aGGCuuUC-----------GGUGGUUa-UCUGGUCUCc -5'
5558 3' -50.8 NC_001806.1 + 88997 0.69 0.969055
Target:  5'- gCCaGAAGCCGCCcgacccGACgCGGAGGa -3'
miRNA:   3'- aGGcUUUCGGUGGuuau--CUG-GUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 89301 0.69 0.969055
Target:  5'- cCCGGAcgccgcccuGGCCGCCGAcuuuccuCCGGGGGa -3'
miRNA:   3'- aGGCUU---------UCGGUGGUUaucu---GGUCUCC- -5'
5558 3' -50.8 NC_001806.1 + 107027 0.68 0.972036
Target:  5'- gCCGGGuuGGCCGCCcgcgGGGCCGcGGGc -3'
miRNA:   3'- aGGCUU--UCGGUGGuua-UCUGGUcUCC- -5'
5558 3' -50.8 NC_001806.1 + 9532 0.68 0.972036
Target:  5'- cUCCGGggGGGCCAgCCAcgGGACCu--GGu -3'
miRNA:   3'- -AGGCU--UUCGGU-GGUuaUCUGGucuCC- -5'
5558 3' -50.8 NC_001806.1 + 13102 0.68 0.974536
Target:  5'- cCCGAugcuGuCCACCGucacccccugcugGUAGGCCuGGGGg -3'
miRNA:   3'- aGGCUuu--C-GGUGGU-------------UAUCUGGuCUCC- -5'
5558 3' -50.8 NC_001806.1 + 136703 0.68 0.977119
Target:  5'- aCCGcgGGCCGCCAcguGGCCGagcaguccgccucGAGGu -3'
miRNA:   3'- aGGCuuUCGGUGGUuauCUGGU-------------CUCC- -5'
5558 3' -50.8 NC_001806.1 + 73112 0.68 0.977366
Target:  5'- cCCGGccGGGCCGCCGGUcgccgAGGCgGgcGAGGa -3'
miRNA:   3'- aGGCU--UUCGGUGGUUA-----UCUGgU--CUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.